Repo for the publication: Population structure and insecticide response of Gammarus spp. in agricultural and upstream forested sites of small streams

This repo contains the R code and data for the related manuscript published in Environmental Sciences Europe

Written by Anke Schneeweiss, revised by Verena C. Schreiner

Content Overview:

Data/20230505_data_part_1_tolerance: Data on acute toxicity tests of Gammarus spp. using imidacloprid: for column definitions see the R-Script line 116-126

Data/20230505_data_part2_genetics_Gammarus_fossarum: Data on Gammarus fossarum CO1 sequences fasta file MUSCLE HQ>50%

Data/20230505_data_part2_genetics_Gammarus_pulex: Data on Gammarus pulex CO1 sequences fasta file MUSCLE HQ>0%

Data/20230505_data_part_3_lipids: Data on lipid content in µg and dry weight in mg - values are given per individual and lipid content in µg per mg tissue (weight normalised)

Data/20230505_data_4_gammarus_abundance: Gammarus species abundance data for 18 sites in Rhineland-Palatinate, south-west Germany

Scripts/20230505_Rscript_pub3_part1_tolerance: Provides the R Markdown code to calculate the tolerance differences based on the results of the acute toxicity tests and compare between site types

Scripts/20230505_Rscript_pub3_part2_genetics: Provides the R Markdown code to calculate the genetic differentiation and diversity and compare between site types

Scripts/20230505_Rscript_pub3_part3_lipids: Provides the R Markdown code to compare lipid content and dry weight between site types