Installation

The software can be installed using pip

pip install bio-corgi

Warning

Do not try just pip install corgi because that is a different package.

To install the latest version from the repository, you can use this command:

pip install git+https://github.com/rbturnbull/corgi.git

Note

Soon corgi will be able to be installed using conda.

Usage

To make predictions, run the corgi command line tool:

corgi --file <input seq file>

This will create a directory with the predictions in a CSV file and in fasta format.

For more information about the other options, see the help with:

corgi --help

For help on training a model with corgi, run:

corgi-train --help

Credits

• Robert Turnbull <robert.turnbull@unimelb.edu.au>
• Created using torchapp (https://github.com/rbturnbull/torchapp)