/
RcsbFvConfig.ts
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/
RcsbFvConfig.ts
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import {RcsbFvDisplayTypes, InterpolationTypes, RcsbFvDefaultConfigValues} from './RcsbFvDefaultConfigValues';
import {RcsbFvDisplayConfigInterface, RcsbFvRowExtendedConfigInterface} from "./RcsbFvConfigInterface";
import {
RcsbFvTrackData,
RcsbDataManager,
RcsbFvTrackDataElementInterface, RcsbFvColorGradient
} from "../../RcsbDataManager/RcsbDataManager";
import {LocationViewInterface} from "../../RcsbBoard/RcsbBoard";
import {RcsbFvTooltipInterface} from "../RcsbFvTooltip/RcsbFvTooltipInterface";
/**Board track configuration manager className*/
export class RcsbFvConfig implements RcsbFvRowExtendedConfigInterface{
trackId: string;
boardId: string;
displayType: RcsbFvDisplayTypes;
length: number;
range: {
min: number;
max:number;
};
elementId?: string;
trackData?: RcsbFvTrackData;
displayConfig?: Array<RcsbFvDisplayConfigInterface>;
trackHeight?: number;
trackWidth?: number;
trackColor?: string;
displayColor?: string | RcsbFvColorGradient;
displayDomain?: [number,number];
interpolationType? : string;
dynamicDisplay?: boolean;
nonEmptyDisplay?: boolean;
elementClickCallback?:(d?:RcsbFvTrackDataElementInterface, e?: MouseEvent)=>void;
elementEnterCallback?:(d?:RcsbFvTrackDataElementInterface, e?: MouseEvent)=>void;
elementLeaveCallback?:(d?:RcsbFvTrackDataElementInterface, e?: MouseEvent)=>void;
includeTooltip?: boolean;
updateDataOnMove?:(d:LocationViewInterface)=>Promise<RcsbFvTrackData>;
overlap:boolean = false;
minRatio?:number;
selectDataInRangeFlag?: boolean;
hideEmptyTrackFlag?: boolean;
highlightHoverPosition?:boolean;
highlightHoverElement?:boolean;
highlightHoverCallback?:(n:Array<RcsbFvTrackDataElementInterface>)=>void;
hideInnerBorder?:boolean;
hideRowGlow?:boolean;
tooltipGenerator?: RcsbFvTooltipInterface;
constructor(args:RcsbFvRowExtendedConfigInterface) {
this.updateConfig(args);
}
/**Update board track configuration. This method sets some attributes to default values when configuration values are not available.
* @param args Board track configuration object
* */
public updateConfig(args:RcsbFvRowExtendedConfigInterface): void {
//external config
if(typeof args.trackId === "string" ) {
this.trackId = args.trackId;
}
if(typeof args.boardId === "string"){
this.boardId = args.boardId;
}
if(typeof args.length === "number"){
this.length = args.length;
}
if(typeof args.range === "object" && typeof args.range.min === "number" && typeof args.range.max === "number"){
this.range = args.range;
}
if(typeof args.displayType === "string" ){
this.displayType = args.displayType;
}else{
throw "Fatal error: Display type not found";
}
if(typeof args.elementId === "string") {
this.elementId = args.elementId;
}
if(typeof args.trackData != "undefined") {
this.trackData = RcsbDataManager.processData(args.trackData);
}
if(args.displayConfig instanceof Array) {
this.displayConfig = args.displayConfig;
}
if(typeof args.elementClickCallback === "function"){
this.elementClickCallback = args.elementClickCallback;
}
if(typeof args.elementEnterCallback === "function"){
this.elementEnterCallback = args.elementEnterCallback;
}
if(typeof args.elementLeaveCallback === "function"){
this.elementLeaveCallback = args.elementLeaveCallback;
}
if(typeof args.updateDataOnMove === "function"){
this.updateDataOnMove = args.updateDataOnMove;
}
if(typeof args.dynamicDisplay === "boolean"){
this.dynamicDisplay = args.dynamicDisplay;
}
if(typeof args.nonEmptyDisplay === "boolean"){
this.nonEmptyDisplay = args.nonEmptyDisplay;
}
if(typeof args.trackWidth === "number"){
this.trackWidth = args.trackWidth;
}
if(typeof args.minRatio === "number"){
this.minRatio = args.minRatio;
}
if(typeof args.selectDataInRangeFlag === "boolean"){
this.selectDataInRangeFlag = args.selectDataInRangeFlag;
}
if(typeof args.hideEmptyTrackFlag === "boolean"){
this.hideEmptyTrackFlag = args.hideEmptyTrackFlag;
}
if(typeof args.highlightHoverPosition === "boolean"){
this.highlightHoverPosition = args.highlightHoverPosition;
}
if(typeof args.highlightHoverElement === "boolean"){
this.highlightHoverElement = args.highlightHoverElement;
}
if(typeof args.highlightHoverCallback === "function"){
this.highlightHoverCallback = args.highlightHoverCallback;
}
//default config available
if(typeof args.trackHeight === "number"){
this.trackHeight = args.trackHeight;
}else if(this.displayType === RcsbFvDisplayTypes.AXIS){
this.trackHeight = RcsbFvDefaultConfigValues.trackAxisHeight;
}else {
this.trackHeight = RcsbFvDefaultConfigValues.trackHeight;
}
if( typeof args.trackColor === "string"){
this.trackColor = args.trackColor;
}else if(typeof this.trackColor != "string"){
this.trackColor = RcsbFvDefaultConfigValues.trackColor;
}
if(typeof args.displayColor === "string" || (args.displayColor != null && typeof args.displayColor === "object")){
this.displayColor = args.displayColor;
}else if(this.displayColor == null){
this.displayColor = RcsbFvDefaultConfigValues.displayColor;
}
if(args.displayDomain instanceof Array){
this.displayDomain = args.displayDomain;
}else if( !(this.displayDomain instanceof Array) ){
this.displayDomain = RcsbFvDefaultConfigValues.displayDomain;
}
if(typeof args.interpolationType === "string"){
this.interpolationType = this.getInterpolationType(args.interpolationType);
}else if(typeof this.interpolationType != "string"){
this.interpolationType = RcsbFvDefaultConfigValues.interpolationType;
}
if(typeof args.includeTooltip === "boolean"){
this.includeTooltip = args.includeTooltip;
}else{
this.includeTooltip = true;
}
if(typeof args.hideInnerBorder === "boolean"){
this.hideInnerBorder = args.hideInnerBorder;
}else{
this.hideInnerBorder = RcsbFvDefaultConfigValues.hideInnerBorder;
}
if(typeof args.hideRowGlow === "boolean"){
this.hideRowGlow = args.hideRowGlow;
}else{
this.hideRowGlow = RcsbFvDefaultConfigValues.hideRowGlow;
}
if(typeof args.tooltipGenerator === "object")
this.tooltipGenerator = args.tooltipGenerator;
this.overlap = args.overlap === true;
}
/**Check if sequence length and DOM element Id are available
* @return boolean
* */
configCheck() : boolean{
return ( (typeof this.length === "number" || typeof this.range === "object") && typeof this.elementId === "string")
}
getInterpolationType(type: string): string{
switch (type) {
case InterpolationTypes.STEP: {
return InterpolationTypes.STEP;
}
case InterpolationTypes.BASIS: {
return InterpolationTypes.BASIS;
}
case InterpolationTypes.CARDINAL: {
return InterpolationTypes.CARDINAL;
}
case InterpolationTypes.LINEAR: {
return InterpolationTypes.LINEAR;
}
default: {
return InterpolationTypes.STEP;
}
}
}
/**Deletes board track annotation data*/
resetTrackData(): void {
this.trackData = undefined;
}
/**Load board track annotation data
* @param data New board track annotation data
* */
addTrackData( data: RcsbFvTrackData ): void {
if(typeof this.trackData === "undefined"){
this.trackData = new RcsbFvTrackData();
}
(RcsbDataManager.processData(data) as RcsbFvTrackData).forEach(d=>{
(this.trackData as RcsbFvTrackData).push(d);
});
}
/**Load board track annotation data
* @param data New board track annotation data
* */
updateTrackData(data: RcsbFvTrackData):void{
this.trackData = RcsbDataManager.processData(data);
}
}