The c/c++ implementation of the MMTF API, decoder and encoder.
This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".
The specification of the MMTF format for biological structures
Methods for fast structural database searches and clustering
The java implementation of the MMTF API, decoder and encoder.
supplemental material for a manuscript that is under review
Benchmarks for testing the symmetry package
The python implementation of the MMTF API, decoder and encoder.
PDB Amino Acid Sequence Viewer
An object relational mapping of UniProt XML files to Java classes and databases using Hibernate.
A module to hold Spark examples and functions for the MMTF project
Biojava based RCSB Viewers
A Census of Symmetry in Protein Structural DataSets
A repository of Zeppelin notebooks
Convenience tools for working with Apache Spark in the context of PDB data.
Provides high-density compression and decompression of biomolecular structures.
Shell project to create binaries for symmetry executables
Search for subunits of tertiary psuedosymmetry that occur throughout fold space