@rcsb

RCSB PDB

Github repository of the RCSB Protein Data Bank

  • The c/c++ implementation of the MMTF API, decoder and encoder.

    C 4 4 Updated Feb 21, 2017
  • This repository contains the compression methods described in the paper "Towards an efficient compression of 3D coordinates of macromolecular structures".

    Java 1 Updated Feb 21, 2017
  • The specification of the MMTF format for biological structures

    compression file-format biological-structures

    Shell 10 6 Updated Feb 21, 2017
  • Methods for fast structural database searches and clustering

    Java 7 Updated Feb 14, 2017
  • The java implementation of the MMTF API, decoder and encoder.

    Java 5 5 Updated Jan 11, 2017
  • ๐Ÿ“ The Protein Feature View - a SVG library for visualising protein annotations

    JavaScript 7 1 Updated Jan 5, 2017
  • supplemental material for a manuscript that is under review

    1 2 Updated Dec 4, 2016
  • Benchmarks for testing the symmetry package

    Python 2 5 Updated Dec 2, 2016
  • The python implementation of the MMTF API, decoder and encoder.

    Python 12 5 Updated Nov 24, 2016
  • PDB Amino Acid Sequence Viewer

    Java 2 4 Updated Oct 25, 2016
  • JavaScript Updated Sep 1, 2016
  • The javascript implementation of the MMTF format.

    JavaScript 3 1 Updated Aug 31, 2016
  • An object relational mapping of UniProt XML files to Java classes and databases using Hibernate.

    Java 3 1 Updated Aug 25, 2016
  • A module to hold Spark examples and functions for the MMTF project

    Java 1 2 Updated Aug 20, 2016
  • Python 1 Updated Aug 18, 2016
  • Biojava based RCSB Viewers

    Java 4 7 Updated Aug 17, 2016
  • ๐ŸŽก Detect, analyze, and visualize protein symmetry

    Java 13 12 Updated Jun 27, 2016
  • A Census of Symmetry in Protein Structural DataSets

    Updated Jun 16, 2016
  • a javascript library to generate SVG based ideograms of chromosomes showing cytogenetic bands

    JavaScript 1 Updated Mar 28, 2016
  • Java 2 Updated Mar 24, 2016
  • join

    Java 2 2 Updated Mar 1, 2016
  • A repository of Zeppelin notebooks

    Updated Feb 29, 2016
  • ๐Ÿ“Š An (experimental) repository for sharing PDB data ready for data mining and analytics.

    Updated Feb 28, 2016
  • Convenience tools for working with Apache Spark in the context of PDB data.

    Java 3 1 Updated Jan 19, 2016
  • Provides high-density compression and decompression of biomolecular structures.

    Java 3 3 Updated Nov 16, 2015
  • Shell project to create binaries for symmetry executables

    2 1 Updated Aug 19, 2015
  • ๐ŸŒˆ Create color blind friendly color palettes in Java

    Java 16 5 Updated Jul 20, 2015
  • Search for subunits of tertiary psuedosymmetry that occur throughout fold space

    Java 1 1 Updated Sep 13, 2013