Add lastdb datatype for last tool (PR galaxyproject#2749)

rdallet · Jun 12, 2020 · 446a79d · 446a79d
1 parent dd01678
commit 446a79d
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diff --git a/lib/galaxy/config/sample/datatypes_conf.xml.sample b/lib/galaxy/config/sample/datatypes_conf.xml.sample
@@ -791,6 +791,8 @@
     <datatype extension="dada2_sequencetable" type="galaxy.datatypes.tabular:Tabular" mimetype="application/text" subclass="true" display_in_upload="true" />
     <datatype extension="dada2_uniques" type="galaxy.datatypes.tabular:Tabular" mimetype="application/text" subclass="true" display_in_upload="true" />
     <datatype extension="ckpt" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" />
+    <datatype extension="lastdb" type="galaxy.datatypes.last:LastDb" mimetype="text/html" display_in_upload="false"/>
+</datatypes>
   </registration>
   <sniffers>
     <!--

diff --git a/lib/galaxy/datatypes/last.py b/lib/galaxy/datatypes/last.py
@@ -0,0 +1,18 @@
+from galaxy.datatypes.data import Data
+
+
+class LastDb(Data):
+    """Class for LAST database files."""
+    file_ext = 'lastdb'
+    allow_datatype_change = False
+    composite_type = 'basic'
+
+    def __init__(self, **kwd):
+        Data.__init__(self, **kwd)
+        self.add_composite_file('lastdb.bck', is_binary=True)
+        self.add_composite_file('lastdb.des', is_binary=False)  # description file
+        self.add_composite_file('lastdb.prj', is_binary=False)  # project resume
+        self.add_composite_file('lastdb.sds', is_binary=True)
+        self.add_composite_file('lastdb.ssp', is_binary=True)
+        self.add_composite_file('lastdb.suf', is_binary=True)
+        self.add_composite_file('lastdb.tis', is_binary=True)