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Answered by
ptosco
Aug 4, 2021
Replies: 1 comment 1 reply
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RDKit will depict an explicit C atom when the are neither multiple bonds nor substituents that help showing the presence of a carbon atom, and the two contiguous single bonds are almost collinear, making it very difficult to figure out that there is indeed a carbon atom in between the two bonds.
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Answer selected by
greglandrum
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RDKit will depict an explicit C atom when the are neither multiple bonds nor substituents that help showing the presence of a carbon atom, and the two contiguous single bonds are almost collinear, making it very difficult to figure out that there is indeed a carbon atom in between the two bonds.
If you switch to the CoordGen depiction you will get a nicer layout that does not require those explicit carbons as it has 120 degree angles between sp3 carbons: