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[Q&A] Represent Cis-Trans in SMILES Notation of Functional Groups in the Ring (No identifying bond type of ring) #4593

Answered by greglandrum
IchiruTake asked this question in General
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Hi, I hope I've understood the question correctly.
In this situation cis/trans isn't the correct terminology as far as the RDKit is concerned. Within the RDKit cis/trans applies to bonds, but here we're dealing with atomic stereochemistry: chirality
Are you asking how to distinguish between these two structures?

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