Made code more resistant to changes in EOL classifications

rdmpage · Jan 27, 2015 · 6417504 · 6417504
1 parent 93c0b6f
commit 6417504
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Showing 83 changed files with 226 additions and 8 deletions.
diff --git a/eoliphone/children.php b/eoliphone/children.php
@@ -14,15 +14,25 @@
 
 //echo $url;
 $json = get($url);
+
+//echo $json;
+
 $obj = json_decode($json);
 
+/*
+echo '<pre>';
+print_r($obj);
+echo '</pre>';
+exit();
+*/
+
 echo'
 <!DOCTYPE html> 
 <html> 
 	<head> 
 	<title>EOL Classification</title> 
 	
-	<meta name="viewport" content="width=device-width; initial-scale=1.0; user-scalable=0;"> 
+	<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=0"> 
 	<meta name="apple-mobile-web-app-capable" content="yes" />
 
 	<link rel="stylesheet" href="../css/jquery.mobile-1.0.css" />
@@ -54,15 +64,16 @@
 		switch ($obj->nameAccordingTo[0])
 		{
 			case 'WORMS Species Information (Marine Species)':
-				echo 'worms.html';
+				echo 'worms_root.php';
 				break;
 
 			case 'Species 2000 & ITIS Catalogue of Life: Annual Checklist 2010':
-				echo 'col.html';
+			case 'Species 2000 & ITIS Catalogue of Life: April 2013':
+				echo 'col_root.php';
 				break;
 
 			case 'NCBI Taxonomy':
-				echo 'ncbi.html';
+				echo 'ncbi_root.php';
 				break;
 
 			default:

diff --git a/eoliphone/col_root.php b/eoliphone/col_root.php
@@ -0,0 +1,60 @@
+<?php
+
+require_once('../lib.php');
+
+// 1188 CoL
+
+$url = 'http://eol.org/api/hierarchies/1.0/1188.json?cache_ttl=';
+
+$json = get($url);
+
+$obj = json_decode($json);
+
+echo '
+<!DOCTYPE html> 
+<html> 
+	<head> 
+	<title>Catalogue of Life</title> 
+	
+	<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=0"> 
+	<meta name="apple-mobile-web-app-capable" content="yes" />
+
+	<link rel="stylesheet" href="../css/jquery.mobile-1.0.css" />
+	<link rel="stylesheet"  href="jquery.mobile.scrollview.css" />
+
+	<script type="text/javascript" src="../js/jquery.js"></script>
+	<script type="text/javascript" src="../js/jquery.mobile-1.0.js"></script>
+	
+	<script src="jquery.easing.1.3.js"></script>
+	<script src="jquery.mobile.scrollview.js"></script>
+	<script src="scrollview.js"></script>
+
+</head> 
+
+<body> 
+
+<div data-role="page">
+
+	<div data-role="header">
+		<a href="index.html" data-transition="slide" data-direction="reverse" data-icon="arrow-l">EOL Classifications</a>
+		<h1>Catalogue of Life</h1>
+	</div><!-- /header -->
+
+	<div data-role="content" data-scroll="true">	
+
+	<!-- CoL -->
+	
+	<!-- this is hard coded which means it will break with new classifications -->
+  	<ul data-role="listview" >';
+
+  	foreach ($obj->roots as $root)
+  	{
+  		echo '<li><a href="children.php?id=' . $root->taxonID . '"><img src="thumbnail.php?taxonConceptID=' . $root->taxonConceptID . '"/>' . $root->scientificName . '</a></li>' . "\n";
+	}  	
+echo '    </ul>
+	</div><!-- /content -->
+
+</div><!-- /page -->
+
+</body>
+</html>';
diff --git a/eoliphone/details.php b/eoliphone/details.php
@@ -85,6 +85,8 @@
 	$html .= '<h1>' .  $obj->scientificName . '</h1>';
 
 
+	/*
+	// Ignore classifications as EOL API returns multiple classifications for some providers and hence we can get the wrong id for linking 
 	if (isset($obj->taxonConcepts))
 	{
 		$html .= '<h2>Classifications</h2>';
@@ -108,8 +110,33 @@
 		}
 		$html .= '</ul>';
 	}
+	*/
+
+	// Text
+	if (isset($obj->dataObjects))
+	{
+		$text = '';
+		foreach ($obj->dataObjects as $dataObject)
+		{
+			if ($dataObject->dataType == 'http://purl.org/dc/dcmitype/Text')
+			{
+				if (isset($dataObject->description))
+				{
+					$text = $dataObject->description;
+				}
+			}
+		}
+
+		if ($text != '')
+		{
+			$html .= '<h2>Description</h2>';
+			$html .= $text;
+		}
+	}
+
 
 
+	// Images
 	if (isset($obj->dataObjects))
 	{
 		$html .= '<h2>Images</h2>';

diff --git a/eoliphone/index.html b/eoliphone/index.html
@@ -3,7 +3,7 @@
 	<head> 
 	<title>EOL Classifications</title> 
 
-	<meta name="viewport" content="width=device-width; initial-scale=1.0; user-scalable=0;"> 
+	<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=0"> 
 	<meta name="apple-mobile-web-app-capable" content="yes" />
 
 	<link rel="stylesheet" href="../css/jquery.mobile-1.0.css" />
@@ -29,9 +29,9 @@ <h1>EOL Classifications</h1>
 	<div data-role="content">	
 
   	<ul data-role="listview" data-inset="true">
-    	<li><a href="col.html"><img src="images/catalogueoflife-twitter.JPG"/>Catalogue of Life</a></li>
-    	<li><a href="ncbi.html"><img src="images/ncbi-twitter.jpg"/>NCBI Taxonomy</a></li>
-    	<li><a href="worms.html"><img src="images/worms-twitter.gif"/>World Register of Marine Species</a></li>
+    	<li><a href="col_root.php"><img src="images/catalogueoflife-twitter.JPG"/>Catalogue of Life</a></li>
+    	<li><a href="ncbi_root.php"><img src="images/ncbi-twitter.jpg"/>NCBI Taxonomy</a></li>
+    	<li><a href="worms_root.php"><img src="images/worms-twitter.gif"/>World Register of Marine Species</a></li>
     </ul>
 	</div><!-- /content -->
 

diff --git a/eoliphone/ncbi_root.php b/eoliphone/ncbi_root.php
@@ -0,0 +1,60 @@
+<?php
+
+require_once('../lib.php');
+
+// 1172 NCBI
+
+$url = 'http://eol.org/api/hierarchies/1.0/1172.json?cache_ttl=';
+
+$json = get($url);
+
+$obj = json_decode($json);
+
+echo '
+<!DOCTYPE html> 
+<html> 
+	<head> 
+	<title>NCBI Taxonomy</title> 
+	
+	<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=0"> 
+	<meta name="apple-mobile-web-app-capable" content="yes" />
+
+	<link rel="stylesheet" href="../css/jquery.mobile-1.0.css" />
+	<link rel="stylesheet"  href="jquery.mobile.scrollview.css" />
+
+	<script type="text/javascript" src="../js/jquery.js"></script>
+	<script type="text/javascript" src="../js/jquery.mobile-1.0.js"></script>
+	
+	<script src="jquery.easing.1.3.js"></script>
+	<script src="jquery.mobile.scrollview.js"></script>
+	<script src="scrollview.js"></script>
+
+</head> 
+
+<body> 
+
+<div data-role="page">
+
+	<div data-role="header">
+		<a href="index.html" data-transition="slide" data-direction="reverse" data-icon="arrow-l">EOL Classifications</a>
+		<h1>NCBI Taxonomy</h1>
+	</div><!-- /header -->
+
+	<div data-role="content" data-scroll="true">	
+
+	<!-- CoL -->
+	
+	<!-- this is hard coded which means it will break with new classifications -->
+  	<ul data-role="listview" >';
+
+  	foreach ($obj->roots as $root)
+  	{
+  		echo '<li><a href="children.php?id=' . $root->taxonID . '"><img src="thumbnail.php?taxonConceptID=' . $root->taxonConceptID . '"/>' . $root->scientificName . '</a></li>' . "\n";
+	}  	
+echo '    </ul>
+	</div><!-- /content -->
+
+</div><!-- /page -->
+
+</body>
+</html>';
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diff --git a/eoliphone/worms_root.php b/eoliphone/worms_root.php
@@ -0,0 +1,60 @@
+<?php
+
+require_once('../lib.php');
+
+// 123 WoRMS
+
+$url = 'http://eol.org/api/hierarchies/1.0/123.json?cache_ttl=';
+
+$json = get($url);
+
+$obj = json_decode($json);
+
+echo '
+<!DOCTYPE html> 
+<html> 
+	<head> 
+	<title>World Register of Marine Species</title> 
+	
+	<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=0"> 
+	<meta name="apple-mobile-web-app-capable" content="yes" />
+
+	<link rel="stylesheet" href="../css/jquery.mobile-1.0.css" />
+	<link rel="stylesheet"  href="jquery.mobile.scrollview.css" />
+
+	<script type="text/javascript" src="../js/jquery.js"></script>
+	<script type="text/javascript" src="../js/jquery.mobile-1.0.js"></script>
+	
+	<script src="jquery.easing.1.3.js"></script>
+	<script src="jquery.mobile.scrollview.js"></script>
+	<script src="scrollview.js"></script>
+
+</head> 
+
+<body> 
+
+<div data-role="page">
+
+	<div data-role="header">
+		<a href="index.html" data-transition="slide" data-direction="reverse" data-icon="arrow-l">EOL Classifications</a>
+		<h1>World Register of Marine Species</h1> 
+	</div><!-- /header -->
+
+	<div data-role="content" data-scroll="true">	
+
+	<!-- CoL -->
+	
+	<!-- this is hard coded which means it will break with new classifications -->
+  	<ul data-role="listview" >';
+
+  	foreach ($obj->roots as $root)
+  	{
+  		echo '<li><a href="children.php?id=' . $root->taxonID . '"><img src="thumbnail.php?taxonConceptID=' . $root->taxonConceptID . '"/>' . $root->scientificName . '</a></li>' . "\n";
+	}  	
+echo '    </ul>
+	</div><!-- /content -->
+
+</div><!-- /page -->
+
+</body>
+</html>';