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Integration Refinery with Galaxy. Step 1: Creating a Galaxy Instance #10

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oneklc opened this issue Sep 5, 2013 · 1 comment
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@oneklc
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oneklc commented Sep 5, 2013

Following the instructions for importing a workflow from galaxy into refinery.
Step 1 is to create a galaxy instance in refinery.

The instructions say to use the administration interface, which i can't seam to find.
At 1st i thought my refinery user didn't have enough permissions to see the administration interface (perhaps my creation of the django super user failed, though an account was created....)

Then I found the create_galaxy_instance command in manage.py.
Though there was no details on how to use it.

Using my imagination i tried:
python manage.py create_galaxy_instance galaxyAPIURL
But that didn't work either.

@hackdna
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hackdna commented Sep 17, 2013

Django admin interface can be found at /admin/ URL (for example: http://localhost:8000/admin/). You need to create a Django superuser in order to be able to login (command: python manage.py createsuperuser). Then you can create a Galaxy instance using a form at http://localhost:8000/admin/galaxy_connector/instance/.

Alternatively, command for creating a Galaxy instance has the following syntax:
python manage.py create_galaxy_instance "Galaxy base URL" "Galaxy account API key" --description ""
for example:
python manage.py create_galaxy_instance "http://localhost:8080" "8a74c7353f770ebb36832536c002e6a3" --description "me@example.com on localhost"

@psm3426 psm3426 closed this as completed Feb 20, 2014
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