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removed script: gen_fastq.sh --> confused with get_fastq.sh
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lrog committed Jul 24, 2017
1 parent fdf0473 commit 54f4f29
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Showing 2 changed files with 3 additions and 11 deletions.
8 changes: 0 additions & 8 deletions scripts/gen_fastq.sh

This file was deleted.

6 changes: 3 additions & 3 deletions scripts/get_fastq.sh
100644 → 100755
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
#!/bin/bash

LINES=10000
LINES=400000
OUT_1=test_1.fq
OUT_2=test_2.fq

curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024163/ERR024163_1.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_1
curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR024/ERR024163/ERR024163_2.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_2
curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR174/ERR174324/ERR174324_1.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_1
curl ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR174/ERR174324/ERR174324_2.fastq.gz 2>/dev/null | gunzip | head -n $LINES > $OUT_2

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