Skip to content

Issues: refresh-bio/KMC

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

91 Open 121 Closed
91 Open 121 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

v3.2.4 stalls on very large dataset but v3.2.1 does not
#238 opened Jul 4, 2024 by peter-kanvas
2
Storing k-mers without counters
#236 opened Jun 19, 2024 by peter-kanvas
2
Dump with empty output
#234 opened May 26, 2024 by MagpiePKU
2
munmap_chunk(): invalid pointer on ubam file - KMC crashes on BAM with long reads bug
#230 opened Feb 29, 2024 by tbenavi1
4
kmc_tools simple intersect & union, not considering reverse complement?
#227 opened Jan 13, 2024 by zhaotao1987
3
smudge pairs install
#224 opened Oct 23, 2023 by zhangyuxin1012
1
Empty output
#223 opened Oct 9, 2023 by mesti90
2
KMC abrubtly not working
#222 opened Sep 28, 2023 by jrostudent
13
kmc_tools filter does not accept large FASTA input
#221 opened Sep 8, 2023 by mscharmann
1
how to create multiple kmc db output as per @input_file_list.
#220 opened Aug 29, 2023 by bio-developer
1
Run stages separately
#218 opened Jul 7, 2023 by tbenavi1
3
Small suggestion
#217 opened Jul 7, 2023 by KBT59
3
Python 3.11 support
#216 opened Jun 6, 2023 by tbenavi1
KMC yields an error on fixed width fasta files
#214 opened Apr 26, 2023 by mesti90
4
Space shortage for output not reported
#211 opened Mar 2, 2023 by jamshed
kmc stuck at Stage 1: XX%(less than 100%)
#207 opened Dec 23, 2022 by fanmiaowang
1
KMC hangs
#206 opened Dec 13, 2022 by jodyphelan
1
have no peak
#202 opened Oct 10, 2022 by JXAUDZF
11
Apple Silicon Build Issue
#201 opened Sep 26, 2022 by jeremiahpslewis
6
the use of the -ci parameter
#198 opened Sep 5, 2022 by SUPERI-SAI
3
Error: cannot open file: /path/xx.fq.gz
#197 opened Aug 31, 2022 by xibeixingchen
3
std::thread::hardware_concurrency() should not be used
#196 opened Aug 23, 2022 by jbd
kmc_tools always in in1: 0%
#194 opened Aug 9, 2022 by zhangrengang
9
How to hack KMC source to implement variant of k-mer counting
#193 opened Aug 9, 2022 by rcedgar
4
kmc_tools info in help message
#192 opened Jul 7, 2022 by MihaiPop
ProTip! Type g i on any issue or pull request to go back to the issue listing page.