UniProt: Correct wrong assignment of canonical sequence path

reimandlab · Jan 12, 2018 · 3e43c3d · 3e43c3d
1 parent 655799d
commit 3e43c3d
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/website/imports/sites/site_importer.py b/website/imports/sites/site_importer.py
@@ -147,6 +147,7 @@ def extract_site_surrounding_sequence(self, site) -> str:
         protein_sequence = self.get_sequence_of_protein(site)
 
         if not protein_sequence:
+            self.issues_counter['no sequence'] += 1
             return nan
 
         offset = self.sequence_offset

diff --git a/website/imports/sites/uniprot/importer.py b/website/imports/sites/uniprot/importer.py
@@ -55,7 +55,7 @@ def __init__(
         sprot_splice_variants_path=None,
     ):
         self.sequences = self.load_sequences(
-            sprot_canonical_path or self.default_path_splice,
+            sprot_canonical_path or self.default_path_canonical,
             sprot_splice_variants_path or self.default_path_splice
         )