Try exports to gz as it stalls with larger files (MC3 dataset) strang…

…ely...
reimandlab · Jun 6, 2017 · 55c5c7c · 55c5c7c
1 parent f44b93a
commit 55c5c7c
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/website/imports/mutations/__init__.py b/website/imports/mutations/__init__.py
@@ -1,3 +1,4 @@
+import gzip
 from abc import ABC
 from abc import abstractmethod
 from collections import defaultdict
@@ -285,7 +286,7 @@ def export(self, path=None, only_primary_isoforms=False):
             directory = os.path.join('exported', 'mutations')
             os.makedirs(directory, exist_ok=True)
 
-            name_template = '{model_name}{restrictions}-{date}.tsv'
+            name_template = '{model_name}{restrictions}-{date}.tsv.gz'
 
             name = name_template.format(
                 model_name=self.model_name,
@@ -305,7 +306,7 @@ def export(self, path=None, only_primary_isoforms=False):
         elif isinstance(self.model, InheritedMutation):
             header += ['disease']
 
-        with open(path, 'w') as f:
+        with gzip.open(path, 'w') as f:
             f.write('\t'.join(header))
 
             for mutation in tqdm(self.model.query.all()):