PSP sites importer: Work only on selected columns (to reduce memory f…

…ootprint)
reimandlab · Jan 10, 2018 · 80435e7 · 80435e7
1 parent 26f7662
commit 80435e7
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/website/imports/sites/psp.py b/website/imports/sites/psp.py
@@ -187,6 +187,7 @@ def load_kinases(self, kinases_path='Kinase_Substrate_Dataset.gz'):
 
         kinases = read_table(path, converters={'SITE_+/-7_AA': str.upper}, skiprows=3)
         kinases = kinases.query('KIN_ORGANISM == "human" and SUB_ORGANISM == "human"')
+        kinases = kinases[['SUB_ACC_ID', 'SITE_+/-7_AA', 'KINASE']]
 
         kinases = kinases.groupby(['SUB_ACC_ID', 'SITE_+/-7_AA'], sort=False, squeeze=True)