Colocalization analysis

Code for article submission.

1. Preprocessing
   • load CZI files
   • maximum intensity Z projection
   • segmentation of all nuclei with Cellpose using DAPI channel
   • remove mitotic nuclei based on previously generated segmentation masks
   • export as PNG
2. CellProfiler
   • extraction of intensity correlation measurements between pairs of channels separately for mitotic and non-mitotic cells