R script Karup 1 #15443

	name: R script Karup 1

	on:
	push:
	paths:
	- .github/workflows/run_script_karup1_ubuntu.yaml
	- reports/karup/**
	- reports/index.md
	- script_karup1.R
	- script_mv-lf.R
	- functions.R
	- renv.lock
	schedule:
	- cron: '30 * * * *' # every hour
	# branches-ignore:
	# - '**'
	jobs:
	render:
	name: Run script for Karup river
	runs-on: ubuntu-latest
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	GH_FTP: ${{ secrets.GH_FTP }}
	steps:
	- name: Checkout repo
	uses: actions/checkout@v4

	- name: Install pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Install dependices
	run: \|
	sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable
	sudo apt-get -y update
	sudo apt-get install -y libgdal-dev libgeos-dev libproj-dev libsqlite3-dev

	- uses: r-lib/actions/setup-renv@v2

	- name: Run R script
	run: Rscript --verbose script_karup1.R

	- name: Run R script
	run: Rscript --verbose script_mv-lf.R

	- name: Commit results
	run: \|
	git config user.email "junk@relund.dk"
	git config user.name "Lars Relund"
	git add \*.csv
	git add \*.html
	git commit --allow-empty -am 'gHA build: ${{github.run_number}}' \|\| echo "No changes to commit"
	git pull --rebase
	git push origin \|\| echo "No changes to commit"

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