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index.Rmd
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index.Rmd
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---
title: "Home"
site: workflowr::wflow_site
output:
workflowr::wflow_html:
toc: false
editor_options:
chunk_output_type: console
---
Welcome to my workflowr Cardiotoxicity research website. I am using workflowr to create reproducible code and data analysis.
# Full data set information
### Full RNA-seq QC
#### [RNA-seq QC and PCA, some volcano plots](https://reneeisnowhere.github.io/Cardiotoxicity/run_all_analysis.html)
## Bayesian gene analysis
[Bayesian gene analysis](https://reneeisnowhere.github.io/Cardiotoxicity/Cormotifcluster_analysis.html)
## Pairwise gene analysis
[pairwise GO](https://reneeisnowhere.github.io/Cardiotoxicity/DEG-GO_analysis.html)
[genes of interest(focus on cpm and LFC boxplots)](https://reneeisnowhere.github.io/Cardiotoxicity/GOI_plots.html)
[LDH analysis and Calcium analysis](https://reneeisnowhere.github.io/Cardiotoxicity/LDH_analysis.html)
[Variance means and var](https://reneeisnowhere.github.io/Cardiotoxicity/variance_scrip.html)
[Variance graphs and plots extended](https://reneeisnowhere.github.io/Cardiotoxicity/Var_genes.html)
[DRC analysis](https://reneeisnowhere.github.io/Cardiotoxicity/DRC_analysis.html)
Data set comparisons
[reQTLS](https://reneeisnowhere.github.io/Cardiotoxicity/Knowles2019.html)
[GTEx data](https://reneeisnowhere.github.io/Cardiotoxicity/GTEx_genes.html)
[Other data/GWAS/crispr](https://reneeisnowhere.github.io/Cardiotoxicity/other_analysis.html)
[Seoane data](https://reneeisnowhere.github.io/Cardiotoxicity/Seoane_chrom.html)
### Paper figures
[Figure 1](https://reneeisnowhere.github.io/Cardiotoxicity/Figure1.html)
[Figure 2](https://reneeisnowhere.github.io/Cardiotoxicity/Figure2.html)
[Figure 3](https://reneeisnowhere.github.io/Cardiotoxicity/Figure3.html)
[Figure 4](https://reneeisnowhere.github.io/Cardiotoxicity/Figure4.html)
[Figure 5](https://reneeisnowhere.github.io/Cardiotoxicity/Figure5.html)
[Figure 6](https://reneeisnowhere.github.io/Cardiotoxicity/Figure6.html)
[Figure 7](https://reneeisnowhere.github.io/Cardiotoxicity/Figure7.html)
[Figure 8](https://reneeisnowhere.github.io/Cardiotoxicity/Figure8.html)
[Figure 9](https://reneeisnowhere.github.io/Cardiotoxicity/Figure9.html)
[Supplementary Figures](https://reneeisnowhere.github.io/Cardiotoxicity/Supplementary_figures.html)
# Older Analysis
Click on this [link](https://reneeisnowhere.github.io/Cardiotoxicity/RNAseqanalysis.html) to see my results from the first analysis
You can also look at my page of GO analysis on both the Bayesian gene analysis and Pairwise gene analysis.
[GO enrichment analysis](https://reneeisnowhere.github.io/Cardiotoxicity/GO_analysis.html)