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I used NMF to plot aheatmap() which works fine until the moment I wanted to move the row labels to the left of the plot using layout.
Whenever I include layout in the command I get the error that this is an unused argument:
Hi Renozao,
I used NMF to plot aheatmap() which works fine until the moment I wanted to move the row labels to the left of the plot using layout.
Whenever I include layout in the command I get the error that this is an unused argument:
Error in aheatmap(x, layout = ".") : unused argument (layout = ".")
so it seems that I could only install NMF_0.20.6 but the documentation on your page is for version0.22
I couldn't find a way to install the newer version.
I tried
Install repotools (need to be done only once)
source('http://renozao.github.io/repotools/install.R')
library(repotools)
latest development version
install.pkgs('NMF')
DEVELOPMENT
install.pkgs('NMF', dependencies = '++')
but it already fails when I want to install repotools.
that's the error I get:
*** installing help indices
** building package indices
** testing if installed package can be loaded
DONE (repotools)
Error in get(Info[i, 1], envir = env) :
lazy-load database '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/pkgmaker/R/pkgmaker.rdb' is corrupt
In addition: Warning message:
In get(Info[i, 1], envir = env) : internal error -3 in R_decompress1
Show Traceback
Rerun with Debug
Error: package or namespace load failed for ‘repotools’
Can you point me towards installing a version that has the function layout included?
Thanks a lot
Saskia
locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] devtools_1.12.0 BiocInstaller_1.22.3 RColorBrewer_1.1-2 NMF_0.20.6 Biobase_2.32.0 BiocGenerics_0.18.0 cluster_2.0.4 rngtools_1.2.4
[9] pkgmaker_0.25.10 registry_0.3
loaded via a namespace (and not attached):
[1] Rcpp_0.12.6 knitr_1.14 magrittr_1.5 munsell_0.4.3 doParallel_1.0.10 colorspace_1.2-6 xtable_1.8-2 gridBase_0.4-7 R6_2.1.3
[10] foreach_1.4.3 httr_1.2.1 stringr_1.1.0 plyr_1.8.4 tools_3.3.1 grid_3.3.1 gtable_0.2.0 git2r_0.15.0 withr_1.0.2
[19] iterators_1.0.8 digest_0.6.10 reshape2_1.4.1 ggplot2_2.1.0 codetools_0.2-14 curl_1.2 memoise_1.0.0 stringi_1.1.1 scales_0.4.0
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