fixed path to primer bed file

replikation · May 22, 2024 · 078eedb · 078eedb
1 parent 8d3c6e0
commit 078eedb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/process/seqrs.nf b/workflows/process/seqrs.nf
@@ -14,7 +14,7 @@ process seqrs {
         seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.1/nCoV-2019.primer.bed --results V5-1-primer-to-repair-Ns-for_${name}.tsv -a 400
         seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.3.2_400/nCoV-2019.primer.bed --results V5.3.2_400-primer-to-repair-Ns-for_${name}.tsv -a 400
         seqrs --genomes ${fasta} --primerbed ${primerbed}/V1200/nCoV-2019.bed --results V1200-primer-to-repair-Ns-for_${name}.tsv -a 1200
-        seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.2.0_1200/nCoV-2019.bed --results V5.2.0_1200-primer-to-repair-Ns-for_${name}.tsv -a 1200
+        seqrs --genomes ${fasta} --primerbed ${primerbed}/V5.2.0_1200/nCoV-2019.primer.bed --results V5.2.0_1200-primer-to-repair-Ns-for_${name}.tsv -a 1200
         """
     stub:
         """