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rki conform metadata output #27

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replikation opened this issue Jan 21, 2021 · 2 comments · Fixed by #28
Closed

rki conform metadata output #27

replikation opened this issue Jan 21, 2021 · 2 comments · Fixed by #28

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@replikation
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  • add RKI conform metadata output
IMS_ID;SENDING_LAB;DATE_DRAW;SEQ_TYPE;SEQ_REASON;SAMPLE_TYPE;OWN_FASTA_ID
IMS-12345-CVDP-00001;12346;20210119;ILLUMINA;X;s001;A-899
IMS-12345-CVDP-00002;12346;20210119;OXFORD_NANOPORE;Y;s006;A_900
IMS-12345-CVDP-00003;12346;20210119;OTHER;A[B.1.1.7/B.1.351];s017;A.901
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replikation commented Jan 21, 2021 •
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e.g. --rki - activates this table which will be autoprepared

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@replikation replikation linked a pull request Jan 22, 2021 that will close this issue
rki output and some smaller fixes #28
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@replikation replikation mentioned this issue Jan 22, 2021
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rki output and some smaller fixes replikation/poreCov
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