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README.md

phylofactor: R package for phylogentic factorization of biological data

This package provides functions to extract and visualize the phylogenetic factors in biological datasets. To get started, download R and Rtools. In R, you first need to download two packages from Bioconductor:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install(c("Biostrings","ggtree"))

Now, you're ready to download the \code{phylofactor} packsage using \code{devtools}:

devtools::install_github('reptalex/phylofactor')

The help functions in this package contain a decent amount of detail for how to perform phylofactorization.

? PhyloFactor
? gpf

For more detailed information, a tutorial is available online here. If you have any questions, please feel free to post issues and contact me!

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