import OpenEBench #119
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| name: openebench metrics import | |
| on: | |
| schedule: | |
| - cron: "0 0 * * 0" | |
| workflow_dispatch: | |
| jobs: | |
| import-openebench: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| path: content | |
| - uses: actions/checkout@v2 | |
| with: | |
| repository: bio-tools/content-ecosystem-utils | |
| path: content-ecosystem-utils | |
| - name: Setup Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: "3.7" | |
| - name: import openebench metrics via http endpoint | |
| run: | | |
| cd ${{ github.workspace }}/content/data | |
| if ${{ github.workspace }}/content-ecosystem-utils/scripts/git-utils/checkout-pr-if-exist.sh openebench-import; then | |
| IS_PR_CREATED=true | |
| else | |
| IS_PR_CREATED=false | |
| fi | |
| cd ${{ github.workspace }}/content-ecosystem-utils/scripts/openebench-import | |
| pip install jsonpatch | |
| OEB_IMPORT_DIFF="$(python openebench-import.py)" | |
| OEB_IMPORT_FILES_ADDED=`echo $(jq -r '.add_files' <<< "$OEB_IMPORT_DIFF")` | |
| OEB_IMPORT_OBJECTS_ADDED=`echo $(jq -r '.add_objects' <<< "$OEB_IMPORT_DIFF")` | |
| OEB_IMPORT_OBJECTS_REMOVED=`echo $(jq -r '.remove_objects' <<< "$OEB_IMPORT_DIFF")` | |
| OEB_IMPORT_DIFF=`echo $(jq -r '.diff' <<< "$OEB_IMPORT_DIFF")` | |
| echo "OEB_IMPORT_FILES_ADDED=$OEB_IMPORT_FILES_ADDED" >> $GITHUB_ENV | |
| echo "OEB_IMPORT_OBJECTS_ADDED=$OEB_IMPORT_OBJECTS_ADDED" >> $GITHUB_ENV | |
| echo "OEB_IMPORT_OBJECTS_REMOVED=$OEB_IMPORT_OBJECTS_REMOVED" >> $GITHUB_ENV | |
| echo "OEB_IMPORT_DIFF=$OEB_IMPORT_DIFF" >> $GITHUB_ENV | |
| echo "IS_PR_CREATED=$IS_PR_CREATED" >> $GITHUB_ENV | |
| - name: commit new data and push to PR | |
| env: | |
| GITHUB_USER: ${{ secrets.GITHUB_USER }} | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| cd ${{ github.workspace }}/content/data | |
| ${{ github.workspace }}/content-ecosystem-utils/scripts/git-utils/import-changes.sh $IS_PR_CREATED openebench-import |