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bioschemas-build.yml
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name: build bioschemas jsonld from bio.tools files
on:
workflow_dispatch:
schedule:
- cron: "0 0 * * 0"
jobs:
build-bioschemas:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
with:
path: content
- uses: actions/checkout@v2
with:
repository: bio-tools/content-ecosystem-utils
path: content-ecosystem-utils
- name: Setup Python
uses: actions/setup-python@v1
with:
python-version: "3.7"
- name: Install dependencies
run: pip install -r ${{ github.workspace }}/content-ecosystem-utils/scripts/bioschemas/requirements.txt
- name: publish bio.tools data as bioschemas files
run: |
cd ${{ github.workspace }}/content-ecosystem-utils/scripts/bioschemas
python biotools_to_bioschemas.py
- name: commit all changes
env:
GITHUB_USER: ${{ secrets.GITHUB_USER }}
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
cd ${{ github.workspace }}/content/data
git config --local user.email "tpe-bot@github.com"
git config --local user.name "Tools Platform Ecosystem bot"
git add -A
if git commit -m "build bioschemas on $(date)"; then
git push origin HEAD
echo "successfully created new data"
else
echo "nothing new to add, exiting"
fi