Added new PoMo rate matrices with selection #132
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bjoelle
requested changes
Feb 3, 2021
| { | ||
| argumentRules.push_back( new ArgumentRule( "N" , Natural::getClassTypeSpec(), "Number of individuals.", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); | ||
| argumentRules.push_back( new ArgumentRule( "pi" , Simplex::getClassTypeSpec(), "Vector of allele frequencies.", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); | ||
| argumentRules.push_back( new ArgumentRule( "rho" , ModelVector<RealPos>::getClassTypeSpec(), "Vector of mutation rates: mu=(mu_a0a1,mu_a1a0,mu_a0a2,...).", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); |
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is this argument rho or mu ? is it a vector of mutation rates or exchangeabilities ? (l44)
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updated pomo rate matrices argument rules and committed
| { | ||
| argumentRules.push_back( new ArgumentRule( "N" , Natural::getClassTypeSpec(), "Number of individuals.", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); | ||
| argumentRules.push_back( new ArgumentRule( "pi" , Simplex::getClassTypeSpec(), "Vector of allele frequencies: pi=(pi_a0,pi_a1).", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); | ||
| argumentRules.push_back( new ArgumentRule( "rho" , ModelVector<RealPos>::getClassTypeSpec(), "Vector of mutation rates: mu=(mu_a0a1,mu_a1a0).", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); |
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is this argument rho or mu ? is it a vector of mutation rates or exchangeabilities ? (l44)
There was a problem hiding this comment.
updated pomo rate matrices argument rules and committed
| argumentRules.push_back( new ArgumentRule( "K" , Natural::getClassTypeSpec(), "Number of alleles.", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); | ||
| argumentRules.push_back( new ArgumentRule( "N" , Natural::getClassTypeSpec(), "Number of individuals.", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); | ||
| argumentRules.push_back( new ArgumentRule( "pi" , Simplex::getClassTypeSpec(), "Vector of allele frequencies.", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); | ||
| argumentRules.push_back( new ArgumentRule( "rho" , ModelVector<RealPos>::getClassTypeSpec(), "Vector of mutation rates: mu=(mu_a0a1,mu_a1a0,mu_a0a2,...).", ArgumentRule::BY_CONSTANT_REFERENCE, ArgumentRule::ANY ) ); |
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is this argument rho or mu ? is it a vector of mutation rates or exchangeabilities ? (l45)
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updated pomo rate matrices argument rules and committed
bjoelle
approved these changes
Feb 4, 2021
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Added new PoMo rate matrices with selection: