Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix the uniform topology prior #442

Merged
merged 8 commits into from
Apr 13, 2024
Merged

Fix the uniform topology prior #442

merged 8 commits into from
Apr 13, 2024

Conversation

davidcerny
Copy link
Contributor

This PR addresses an ancient yet easy-to-fix issue, namely the incorrect probabilities yielded by the uniform topology distributions (#212). This error shouldn't affect inference (the ranking of trees should stay exactly the same), but it's nice to make sure we are getting the math right. Both the issue and the solution to it were identified by @plewis, and the new test is adapted from the example script provided in his bug report.

@davidcerny davidcerny merged commit 02229b8 into development Apr 13, 2024
20 checks passed
@davidcerny davidcerny deleted the fix-topology-prior branch April 13, 2024 18:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants