GitHub - reykajayasinghe/public_scripts: Helpful scripts for cancer biologists

Name		Name	Last commit message	Last commit date
Latest commit History 7 Commits
.ipynb_checkpoints		.ipynb_checkpoints
CN_add_to_MAF.pl		CN_add_to_MAF.pl
Dockerfile		Dockerfile
FinalHeatmapFigure1.R		FinalHeatmapFigure1.R
MuSiCA_mutation_signature.R		MuSiCA_mutation_signature.R
Preprocess_VCF_for_SciClone.ipynb		Preprocess_VCF_for_SciClone.ipynb
RNADNA_add_to_MAF.pl		RNADNA_add_to_MAF.pl
RNADNA_readcount.pl		RNADNA_readcount.pl
RSEM_add_to_MAF.pl		RSEM_add_to_MAF.pl
Sequence_Mapping.R		Sequence_Mapping.R
VCF_VAF_Comparison.ipynb		VCF_VAF_Comparison.ipynb
ccds_tobed.py		ccds_tobed.py
filter_mc3_mutations.py		filter_mc3_mutations.py
grepbycolumn.pl		grepbycolumn.pl
ncbi_SRR_download.sh		ncbi_SRR_download.sh
quartile_calc.pl		quartile_calc.pl
splitbedbygene.py		splitbedbygene.py
total_samples_with_variants_vcf.py		total_samples_with_variants_vcf.py