labelCol

[lgatto]

The labelColargument isn't documented.

[lgatto]

Here's another issue with labelCol, but despite the warnings, it works:

> plotSpectraMirror(ms[i[1]], ms[i[2]],
+                   labels = addFragments,
+                   labelPos = 3, labelCol = "orange")
Warning messages:
1: In plot.window(xlim = xlim, ylim = ylim, ...) :
  "labelCol" is not a graphical parameter
2: In axis(side = 1, ...) : "labelCol" is not a graphical parameter
3: In axis(side = 2, ...) : "labelCol" is not a graphical parameter
4: In box(...) : "labelCol" is not a graphical parameter
5: In title(main = main, xlab = xlab, ylab = ylab, ...) :
  "labelCol" is not a graphical parameter
6: In plot.xy(xy.coords(x_data[idx, "mz"], x_data[idx, "intensity"]),  :
  "labelCol" is not a graphical parameter
7: In plot.xy(xy.coords(x_data[idx, "mz"], x_data[idx, "intensity"]),  :
  "labelCol" is not a graphical parameter
8: In plot.xy(xy.coords(y_data[idx, "mz"], -y_data[idx, "intensity"]),  :
  "labelCol" is not a graphical parameter
9: In plot.xy(xy.coords(y_data[idx, "mz"], -y_data[idx, "intensity"]),  :
  "labelCol" is not a graphical parameter

[jorainer]

Thanks! I will add the documentation and check how to avoid the warnings.