refactor: replace removePeaks with replaceIntensitiesBelow #101
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- Rename/replace `removePeaks` to `replaceIntensitiesBelow` (issue #89). - Update respective unit tests and documentation.
sgibb
approved these changes
Jun 24, 2020
| if (!is.numeric(threshold)) | ||
| stop("'threshold' must either be 'min' or numeric.") | ||
| if (is.function(threshold)) | ||
| threshold <- threshold(x[, "intensity"], na.rm = TRUE) |
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Wouldn't be threshold(x[, "intensity"], na.rm = TRUE, ...) useful?
Maybe that would be to complicated. Just keep it for now.
Co-authored-by: Sebastian Gibb <mail@sebastiangibb.de>
Codecov Report
@@ Coverage Diff @@
## master #101 +/- ##
==========================================
+ Coverage 90.01% 90.23% +0.22%
==========================================
Files 16 16
Lines 1492 1495 +3
==========================================
+ Hits 1343 1349 +6
+ Misses 149 146 -3
Continue to review full report at Codecov.
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removePeakstoreplaceIntensitiesBelow(issue optimize function names (removePeaks, clean) #89).