Multiple coordinates for a transcript

[Gerde]

Hi,
I found multiple coordinates for a transcript in hg19.sv.table.txt, such as NM_001037501, and it will cause an error in processData() function within AnnotationForKinaseDomain.py, like this:

  File "/bin/iAnnotateSV.py", line 352, in <module>
    main()
  File "/bin/iAnnotateSV.py", line 223, in main
    annDF = processSV(svDF, NewRefDF, args)
  File "/bin/iAnnotateSV.py", line 320, in processSV
    args.allCanonicalTranscriptsPath, args.uniprot, args.verbose)
  File "/usr/local/soft/iAnnotateSV/iAnnotateSV/AnnotationForKinaseDomain.py", line 107, in run
    chr1, pos1, gene1, egene1, egene2, transcript1, refDF, upDF)
  File "/usr/local/soft/iAnnotateSV/iAnnotateSV/AnnotationForKinaseDomain.py", line 173, in getKinaseInfo
    (domainIdx, maxLen, minLen) = processData(chrom, transcript, refDF, upDF)
  File "/usr/local/soft/iAnnotateSV/iAnnotateSV/AnnotationForKinaseDomain.py", line 131, in processData
    transcriptIdx, = (transcripts[transcripts['chrom'] == chrom].index)
ValueError: too many values to unpack

Could I keep only one coordinates manually ?

Best,
Gerde