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optoPAD_openloop.bonsai
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optoPAD_openloop.bonsai
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<?xml version="1.0" encoding="utf-8"?>
<WorkflowBuilder Version="2.2.1">
<Workflow xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:q1="clr-namespace:Bonsai.Dsp;assembly=Bonsai.Dsp" xmlns:q2="clr-namespace:Bonsai.IO;assembly=Bonsai.System" xmlns:q3="clr-namespace:Bonsai.Arduino;assembly=Bonsai.Arduino" xmlns:q4="clr-namespace:Bonsai.Scripting;assembly=Bonsai.Scripting" xmlns:q5="clr-namespace:Bonsai.FlyPad;assembly=Bonsai.FlyPad" xmlns="https://horizongir.org/bonsai">
<Nodes>
<Expression xsi:type="Combinator">
<Combinator xsi:type="q1:MatrixWriter">
<q1:Path>F:\kathrin\optopad\20170703\CapacitanceData_C03_01_22_C01_23_44_C02_45_64</q1:Path>
<q1:Suffix>Timestamp</q1:Suffix>
<q1:Overwrite>false</q1:Overwrite>
<q1:Layout>RowMajor</q1:Layout>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timestamp" />
</Expression>
<Expression xsi:type="q2:CsvWriter">
<q2:FileName>F:\kathrin\optopad\20170703\CapacitanceTimeStamp.csv</q2:FileName>
<q2:Append>false</q2:Append>
<q2:Overwrite>false</q2:Overwrite>
<q2:Suffix>Timestamp</q2:Suffix>
<q2:IncludeHeader>false</q2:IncludeHeader>
<q2:Selector>Source.Timestamp</q2:Selector>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="q3:DigitalOutput">
<q3:PortName>COM4</q3:PortName>
<q3:Pin>50</q3:Pin>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="BooleanProperty">
<Value>false</Value>
</Combinator>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>1</Name>
<Workflow>
<Nodes>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>5</Value>
</Combinator>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Arena</Name>
<Workflow>
<Nodes>
<Expression xsi:type="ExternalizedPropertyOfInt32DigitalOutput">
<MemberName>Pin</MemberName>
<Name>Pin 1_1</Name>
<Value>11</Value>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>import clr
def getOutputType():
return clr.GetClrType(int)
def process(input):
colour = input[1]
if input[0] > 12:
fact = -1
else:
fact = 1
ch = input[0]
if (colour == 1):
return ch
elif (colour == 2):
return ch + 2*fact
elif (colour == 3):
return ch + fact
elif (colour == 4):
return ch - fact
else:
return 50</q4:Script>
</Expression>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Open-Loop Stim</Name>
<Workflow>
<Nodes>
<Expression xsi:type="BitwiseNot" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Delay">
<DueTime>PT2S</DueTime>
</Combinator>
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timer">
<DueTime>PT0S</DueTime>
<Period>PT3S</Period>
</Combinator>
</Expression>
<Expression xsi:type="WorkflowOutput" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Merge" />
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfTimer">
<MemberName>Period</MemberName>
<Name>Period</Name>
<Value>PT3S</Value>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfDelay">
<MemberName>DueTime</MemberName>
<Name>DueTime</Name>
<Value>PT2S</Value>
</Expression>
</Nodes>
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<Edge>
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<Label>Source1</Label>
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<Label>Source1</Label>
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<Label>Source1</Label>
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<Label>Source1</Label>
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<To>5</To>
<Label>Source2</Label>
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<To>3</To>
<Label>Source1</Label>
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<Edge>
<From>8</From>
<To>1</To>
<Label>Source2</Label>
</Edge>
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfTimer">
<MemberName>Period</MemberName>
<Name>Period</Name>
<Value>PT4S</Value>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="q3:DigitalOutput">
<q3:PortName>COM4</q3:PortName>
<q3:Pin>24</q3:Pin>
</Combinator>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>from System import TimeSpan
@returns(TimeSpan)
def process(input):
return TimeSpan.FromSeconds(input[3])</q4:Script>
</Expression>
<Expression xsi:type="WorkflowOutput" />
<Expression xsi:type="ExternalizedTimeSpanOfDelay">
<MemberName>DueTime</MemberName>
<Name>DueTime</Name>
<Value>PT1S</Value>
</Expression>
<Expression xsi:type="ExternalizedPropertyOfStringDigitalOutput">
<MemberName>PortName</MemberName>
<Name>COM4</Name>
<Value>COM4</Value>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timestamp" />
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>import clr
def getOutputType():
return clr.GetClrType(tuple)
def process(input):
with open(r'config/experiment_openloop.dat') as f:
f=[x.strip() for x in f if x.strip()]
data=[tuple(map(float,x.split())) for x in f[0:]]
length = len(data)
return data[input]</q4:Script>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>from System import TimeSpan
@returns(TimeSpan)
def process(input):
return TimeSpan.FromSeconds(input[2])</q4:Script>
</Expression>
<Expression xsi:type="ExternalizedPropertyOfStringExternalizedPropertyOfStringDigitalOutput">
<MemberName>Name</MemberName>
<Name>Name</Name>
<Value>PortName</Value>
</Expression>
<Expression xsi:type="WorkflowInput">
<Name>Source2</Name>
</Expression>
</Nodes>
<Edges>
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<Label>Source1</Label>
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<Label>Source1</Label>
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<Label>Source1</Label>
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<From>11</From>
<To>6</To>
<Label>Source1</Label>
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<To>4</To>
<Label>Source1</Label>
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<Label>Source1</Label>
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<To>13</To>
<Label>Source1</Label>
</Edge>
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Zip" />
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Arena</Name>
<Workflow>
<Nodes>
<Expression xsi:type="ExternalizedPropertyOfInt32DigitalOutput">
<MemberName>Pin</MemberName>
<Name>Pin 1_1</Name>
<Value>11</Value>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>import clr
def getOutputType():
return clr.GetClrType(int)
def process(input):
colour = input[1]
if input[0] > 12:
fact = -1
else:
fact = 1
ch = input[0]
if (colour == 1):
return ch
elif (colour == 2):
return ch + 2*fact
elif (colour == 3):
return ch + fact
elif (colour == 4):
return ch - fact
else:
return 50</q4:Script>
</Expression>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Open-Loop Stim</Name>
<Workflow>
<Nodes>
<Expression xsi:type="BitwiseNot" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Delay">
<DueTime>PT2S</DueTime>
</Combinator>
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timer">
<DueTime>PT0S</DueTime>
<Period>PT3S</Period>
</Combinator>
</Expression>
<Expression xsi:type="WorkflowOutput" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Merge" />
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfTimer">
<MemberName>Period</MemberName>
<Name>Period</Name>
<Value>PT3S</Value>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfDelay">
<MemberName>DueTime</MemberName>
<Name>DueTime</Name>
<Value>PT2S</Value>
</Expression>
</Nodes>
<Edges>
<Edge>
<From>0</From>
<To>6</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>1</From>
<To>0</To>
<Label>Source1</Label>
</Edge>
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<From>2</From>
<To>5</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>2</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>1</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>5</From>
<To>4</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>6</From>
<To>5</To>
<Label>Source2</Label>
</Edge>
<Edge>
<From>7</From>
<To>3</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>8</From>
<To>1</To>
<Label>Source2</Label>
</Edge>
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfTimer">
<MemberName>Period</MemberName>
<Name>Period</Name>
<Value>PT4S</Value>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="q3:DigitalOutput">
<q3:PortName>COM4</q3:PortName>
<q3:Pin>11</q3:Pin>
</Combinator>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>from System import TimeSpan
@returns(TimeSpan)
def process(input):
return TimeSpan.FromSeconds(input[3])</q4:Script>
</Expression>
<Expression xsi:type="WorkflowOutput" />
<Expression xsi:type="ExternalizedTimeSpanOfDelay">
<MemberName>DueTime</MemberName>
<Name>DueTime</Name>
<Value>PT1S</Value>
</Expression>
<Expression xsi:type="ExternalizedPropertyOfStringDigitalOutput">
<MemberName>PortName</MemberName>
<Name>COM4</Name>
<Value>COM4</Value>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timestamp" />
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>import clr
def getOutputType():
return clr.GetClrType(tuple)
def process(input):
with open(r'config/experiment_openloop.dat') as f:
f=[x.strip() for x in f if x.strip()]
data=[tuple(map(float,x.split())) for x in f[0:]]
length = len(data)
return data[input]</q4:Script>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>from System import TimeSpan
@returns(TimeSpan)
def process(input):
return TimeSpan.FromSeconds(input[2])</q4:Script>
</Expression>
<Expression xsi:type="ExternalizedPropertyOfStringExternalizedPropertyOfStringDigitalOutput">
<MemberName>Name</MemberName>
<Name>Name</Name>
<Value>PortName</Value>
</Expression>
<Expression xsi:type="WorkflowInput">
<Name>Source2</Name>
</Expression>
</Nodes>
<Edges>
<Edge>
<From>0</From>
<To>5</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>1</From>
<To>0</To>
<Label>Source1</Label>
</Edge>
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<From>2</From>
<To>11</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>5</To>
<Label>Source2</Label>
</Edge>
<Edge>
<From>4</From>
<To>3</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>5</From>
<To>10</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>6</From>
<To>8</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>8</From>
<To>3</To>
<Label>Source2</Label>
</Edge>
<Edge>
<From>9</From>
<To>5</To>
<Label>Source3</Label>
</Edge>
<Edge>
<From>10</From>
<To>7</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>11</From>
<To>1</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>11</From>
<To>12</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>11</From>
<To>6</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>12</From>
<To>4</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>13</From>
<To>9</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>14</From>
<To>13</To>
<Label>Source1</Label>
</Edge>
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>0</Value>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>7</Value>
</Combinator>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="IntProperty">
<Value>4</Value>
</Combinator>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Arena</Name>
<Workflow>
<Nodes>
<Expression xsi:type="ExternalizedPropertyOfInt32DigitalOutput">
<MemberName>Pin</MemberName>
<Name>Pin 1_1</Name>
<Value>11</Value>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>import clr
def getOutputType():
return clr.GetClrType(int)
def process(input):
colour = input[1]
if input[0] > 12:
fact = -1
else:
fact = 1
ch = input[0]
if (colour == 1):
return ch
elif (colour == 2):
return ch + 2*fact
elif (colour == 3):
return ch + fact
elif (colour == 4):
return ch - fact
else:
return 50</q4:Script>
</Expression>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Open-Loop Stim</Name>
<Workflow>
<Nodes>
<Expression xsi:type="BitwiseNot" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Delay">
<DueTime>PT2S</DueTime>
</Combinator>
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timer">
<DueTime>PT0S</DueTime>
<Period>PT3S</Period>
</Combinator>
</Expression>
<Expression xsi:type="WorkflowOutput" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Merge" />
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfTimer">
<MemberName>Period</MemberName>
<Name>Period</Name>
<Value>PT3S</Value>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfDelay">
<MemberName>DueTime</MemberName>
<Name>DueTime</Name>
<Value>PT2S</Value>
</Expression>
</Nodes>
<Edges>
<Edge>
<From>0</From>
<To>6</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>1</From>
<To>0</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>2</From>
<To>5</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>2</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>1</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>5</From>
<To>4</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>6</From>
<To>5</To>
<Label>Source2</Label>
</Edge>
<Edge>
<From>7</From>
<To>3</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>8</From>
<To>1</To>
<Label>Source2</Label>
</Edge>
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfTimer">
<MemberName>Period</MemberName>
<Name>Period</Name>
<Value>PT4S</Value>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="q3:DigitalOutput">
<q3:PortName>COM4</q3:PortName>
<q3:Pin>20</q3:Pin>
</Combinator>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>from System import TimeSpan
@returns(TimeSpan)
def process(input):
return TimeSpan.FromSeconds(input[3])</q4:Script>
</Expression>
<Expression xsi:type="WorkflowOutput" />
<Expression xsi:type="ExternalizedTimeSpanOfDelay">
<MemberName>DueTime</MemberName>
<Name>DueTime</Name>
<Value>PT1S</Value>
</Expression>
<Expression xsi:type="ExternalizedPropertyOfStringDigitalOutput">
<MemberName>PortName</MemberName>
<Name>COM4</Name>
<Value>COM4</Value>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timestamp" />
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>import clr
def getOutputType():
return clr.GetClrType(tuple)
def process(input):
with open(r'config/experiment_openloop.dat') as f:
f=[x.strip() for x in f if x.strip()]
data=[tuple(map(float,x.split())) for x in f[0:]]
length = len(data)
return data[input]</q4:Script>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>from System import TimeSpan
@returns(TimeSpan)
def process(input):
return TimeSpan.FromSeconds(input[2])</q4:Script>
</Expression>
<Expression xsi:type="ExternalizedPropertyOfStringExternalizedPropertyOfStringDigitalOutput">
<MemberName>Name</MemberName>
<Name>Name</Name>
<Value>PortName</Value>
</Expression>
<Expression xsi:type="WorkflowInput">
<Name>Source2</Name>
</Expression>
</Nodes>
<Edges>
<Edge>
<From>0</From>
<To>5</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>1</From>
<To>0</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>2</From>
<To>11</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>5</To>
<Label>Source2</Label>
</Edge>
<Edge>
<From>4</From>
<To>3</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>5</From>
<To>10</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>6</From>
<To>8</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>8</From>
<To>3</To>
<Label>Source2</Label>
</Edge>
<Edge>
<From>9</From>
<To>5</To>
<Label>Source3</Label>
</Edge>
<Edge>
<From>10</From>
<To>7</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>11</From>
<To>1</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>11</From>
<To>12</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>11</From>
<To>6</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>12</From>
<To>4</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>13</From>
<To>9</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>14</From>
<To>13</To>
<Label>Source1</Label>
</Edge>
</Edges>
</Workflow>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Arena</Name>
<Workflow>
<Nodes>
<Expression xsi:type="ExternalizedPropertyOfInt32DigitalOutput">
<MemberName>Pin</MemberName>
<Name>Pin 1_1</Name>
<Value>11</Value>
</Expression>
<Expression xsi:type="q4:PythonTransform">
<q4:Script>import clr
def getOutputType():
return clr.GetClrType(int)
def process(input):
colour = input[1]
if input[0] > 12:
fact = -1
else:
fact = 1
ch = input[0]
if (colour == 1):
return ch
elif (colour == 2):
return ch + 2*fact
elif (colour == 3):
return ch + fact
elif (colour == 4):
return ch - fact
else:
return 50</q4:Script>
</Expression>
<Expression xsi:type="WorkflowInput">
<Name>Source1</Name>
</Expression>
<Expression xsi:type="NestedWorkflow">
<Name>Open-Loop Stim</Name>
<Workflow>
<Nodes>
<Expression xsi:type="BitwiseNot" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Delay">
<DueTime>PT2S</DueTime>
</Combinator>
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="Combinator">
<Combinator xsi:type="Timer">
<DueTime>PT0S</DueTime>
<Period>PT3S</Period>
</Combinator>
</Expression>
<Expression xsi:type="WorkflowOutput" />
<Expression xsi:type="Combinator">
<Combinator xsi:type="Merge" />
</Expression>
<Expression xsi:type="GreaterThan">
<Operand xsi:type="WorkflowPropertyOfInt64">
<Value>0</Value>
</Operand>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfTimer">
<MemberName>Period</MemberName>
<Name>Period</Name>
<Value>PT3S</Value>
</Expression>
<Expression xsi:type="ExternalizedTimeSpanOfDelay">
<MemberName>DueTime</MemberName>
<Name>DueTime</Name>
<Value>PT2S</Value>
</Expression>
</Nodes>
<Edges>
<Edge>
<From>0</From>
<To>6</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>1</From>
<To>0</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>2</From>
<To>5</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>2</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>3</From>
<To>1</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>5</From>
<To>4</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>6</From>
<To>5</To>
<Label>Source2</Label>
</Edge>
<Edge>
<From>7</From>
<To>3</To>
<Label>Source1</Label>
</Edge>
<Edge>
<From>8</From>
<To>1</To>
<Label>Source2</Label>
</Edge>
</Edges>
</Workflow>
</Expression>