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SplitR on UNIX Cluster #5
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fwiw the |
James, The cluster is probably using Redhat Linux, so the Mac OS X binaries won’t work. Do you have access to Linux-compiled binaries of HYSPLIT? If so, I could include those in SplitR. Then your runs would likely work! Best,
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Sure, makes sense -- I see in the |
It would probably be easier for the end-user if the binaries were to be included in the package. It's easy enough to detect that R is running in Linux and then use the correct binaries. I'll take a look at compiling some HYSPLIT from source for x86 Linux. |
OK, I just reached out to the guy that the HYSPLIT web site says is in |
@rich-iannone thanks for addressing this -- saw you updated. If I run
I'm still getting the
do I need to change something so it's not looking for the binaries in the |
While the linux binaries are indeed available in the package itself, I do have to build in the detection of the OS. I will do that v. soon. (Then I'll have to test this on a Linux partition to make sure it works!) |
Jumped the gun! Don't rush for my sake, I have a rough week ahead anyways :) |
It's okay! But I'll totally get back to it because I'm keen to have the trajectory models working on three platforms. |
Alright @jdossgollin , there is now support for Linux in SplitR. However, take note of the argument names: I've just made them shorter so you'll have to modify calls to |
Cool! |
Hi @rich-iannone,
I'm trying to run on a cluster because I have a fairly large number of trajectories I want to run. If I run a simple script,
library(SplitR) hysplit_trajectory()
I see that the
.gbl
files download without trouble, but then I get an error messageClearly the cluster is having trouble executing the HYSPLIT binaries in the
Splitr/osx
folder.This may be an issue on my end and I can talk to the server people about it but I wanted to ask if you had seen something like this before.
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