The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

file=R/are_detected.R,line=9,col=16,[object_usage_linter] no visible global function definition for 'get_ic50_percentile_binder'

file=R/calc_p_det_tmh_mut.R,line=19,col=16,[object_usage_linter] no visible global function definition for 'get_ic50_percentile_binder'

file=R/check_protein_sequences_length.R,line=25,col=8,[indentation_linter] Indentation should be 6 spaces but is 8 spaces.

file=R/check_target_name.R,line=17,col=25,[object_usage_linter] no visible global function definition for 'get_target_names'

file=R/check_target_name.R,line=21,col=35,[object_usage_linter] no visible global function definition for 'get_target_names'

file=R/create_consensus_topology_conservation.R,line=26,col=3,[object_usage_linter] local variable 'protein_alignment' assigned but may not be used

file=R/create_consensus_topology_conservation.R,line=46,col=7,[commented_code_linter] Commented code should be removed.

file=R/create_consensus_topology_conservation.R,line=49,col=7,[commented_code_linter] Commented code should be removed.

file=R/create_consensus_topology_conservation.R,line=50,col=7,[commented_code_linter] Commented code should be removed.

file=R/create_consensus_topology_conservation.R,line=51,col=7,[commented_code_linter] Commented code should be removed.

Undocumented arguments in documentation object 'simplify_haplotype_names'