Merge branch 'ribi'

mone.pri

@@ -0,0 +1,45 @@
+INCLUDEPATH += ../pbdmms
+
+SOURCES += \
+    $$PWD/mone_dna.cpp \
+    $$PWD/mone_helper.cpp \
+    $$PWD/mone_individual.cpp \
+    $$PWD/mone_parameters.cpp \
+    $$PWD/mone_results.cpp \
+    $$PWD/mone_simulation.cpp \
+    $$PWD/mone_species_id.cpp \
+    $$PWD/mone_sil_frequency_edge.cpp \
+    $$PWD/mone_sil_frequency_vertex.cpp \
+    $$PWD/mone_sil_frequency_vertex_writer.cpp \
+    $$PWD/mone_sil_frequency_phylogeny.cpp \
+    $$PWD/mone_sil.cpp \
+    $$PWD/mone_population.cpp \
+    $$PWD/mone_pin.cpp \
+    $$PWD/mone_menu_dialog.cpp \
+    $$PWD/mone_create_tally.cpp \
+    $$PWD/mone_hopefull_monster.cpp \
+    $$PWD/mone_probability.cpp \
+    $$PWD/mone_jkr_adapters.cpp
+
+HEADERS += \
+    $$PWD/mone_dna.h \
+    $$PWD/mone_helper.h \
+    $$PWD/mone_individual.h \
+    $$PWD/mone_parameters.h \
+    $$PWD/mone_results.h \
+    $$PWD/mone_simulation.h \
+    $$PWD/mone_species_id.h \
+    $$PWD/mone_sil_frequency_edge.h \
+    $$PWD/mone_sil_frequency_vertex.h \
+    $$PWD/mone_sil_frequency_vertex_writer.h \
+    $$PWD/mone_sil_frequency_phylogeny.h \
+    $$PWD/mone_sil.h \
+    $$PWD/mone_tally_to_str.h \
+    $$PWD/mone_population.h \
+    $$PWD/mone_pin.h \
+    $$PWD/mone_sil_frequency_edge_writer.h \
+    $$PWD/mone_menu_dialog.h \
+    $$PWD/mone_create_tally.h \
+    $$PWD/mone_hopefull_monster.h \
+    $$PWD/mone_probability.h \
+    $$PWD/mone_jkr_adapters.h

mone.pro

@@ -0,0 +1,12 @@
+include(any_profiling.pri)
+
+include(gsl.pri)
+include(jkr.pri)
+include(mone.pri)
+include(pbd.pri)
+
+# Boost.Graph
+LIBS += -lboost_graph
+include(../BoostGraphTutorial/BoostGraphTutorial/boost_graph_tutorial.pri)
+
+SOURCES += mone_main.cpp

mone_gui.pri

@@ -0,0 +1,8 @@
+SOURCES += \
+    $$PWD/mone_qtmaindialog.cpp
+
+HEADERS += \
+    $$PWD/mone_qtmaindialog.h
+
+FORMS += \
+    $$PWD/mone_qtmaindialog.ui

mone_gui.pro

@@ -0,0 +1,17 @@
+# General setup
+include(any_gui.pri)
+
+include(gsl.pri)
+include(mone.pri)
+include(pbd.pri)
+include(mone_gui.pri)
+include(jkr.pri)
+include(../RibiLibraries/Qwt.pri)
+include(../SurfacePlotter/QtSurfacePlotWidget.pri)
+
+# Boost.Graph
+LIBS += -lboost_graph
+include(../BoostGraphTutorial/BoostGraphTutorial/boost_graph_tutorial.pri)
+
+SOURCES += mone_qtmain.cpp
+

mone_main.cpp

@@ -0,0 +1,29 @@
+#include <cassert>
+#include <iostream>
+#include "ribi_helper.h"
+#include "ribi_menu_dialog.h"
+#include "gsl/gsl_assert"
+
+int main(int argc, char* argv[])
+{
+  assert(!"Only run in release mode"); //!OCLINT accepted idiom
+  Ensures(!"Only run in release mode"); //!OCLINT accepted idiom
+  try
+  {
+    ribi::menu_dialog d;
+    const std::vector<std::string> args{
+      ribi::convert_arguments(argc,argv)
+    };
+    return d.execute(args);
+  }
+  catch (std::exception& e)
+  {
+    std::cerr << "Error: " << e.what() << '\n';
+    return 1;
+  }
+  catch (...)
+  {
+    std::cerr << "Error: Unknown\n";
+    return 1;
+  }
+}

mone_test.pri

@@ -0,0 +1,28 @@
+INCLUDEPATH += ../pbdmms
+
+HEADERS += \
+    $$PWD/mone_population_factory.h
+
+SOURCES += \
+    $$PWD/mone_main_test.cpp \
+    $$PWD/mone_create_tally_test.cpp \
+    $$PWD/mone_dna_test.cpp \
+    $$PWD/mone_helper_test.cpp \
+    $$PWD/mone_individual_test.cpp \
+    $$PWD/mone_parameters_test.cpp \
+    $$PWD/mone_population_test.cpp \
+    $$PWD/mone_results_test.cpp \
+    $$PWD/mone_sil_frequency_phylogeny_test.cpp \
+    $$PWD/mone_sil_frequency_vertex_test.cpp \
+    $$PWD/mone_sil_test.cpp \
+    $$PWD/mone_simulation_test.cpp \
+    $$PWD/mone_species_id_test.cpp \
+    $$PWD/mone_population_factory.cpp \
+    $$PWD/mone_sil_frequency_edge_test.cpp \
+    $$PWD/mone_population_factory_test.cpp \
+    $$PWD/mone_menu_dialog_test.cpp \
+    $$PWD/mone_tally_to_str_test.cpp \
+    $$PWD/mone_sil_frequency_vertex_writer_test.cpp \
+    $$PWD/mone_jkr_adapters_test.cpp \
+    $$PWD/mone_hopefull_monster_test.cpp \
+    $$PWD/mone_sil_frequency_edge_writer_test.cpp

mone_test.pro

@@ -0,0 +1,14 @@
+# General setup
+include(any_test.pri)
+
+include(gsl.pri)
+include(mone.pri)
+include(mone_test.pri)
+include(pbd.pri)
+include(jkr.pri)
+
+# Boost.Graph
+LIBS += -lboost_graph
+include(../BoostGraphTutorial/BoostGraphTutorial/boost_graph_tutorial.pri)
+
+include(../RibiUnits/RibiUnits.pri)