R package for an introduction to transkingdom network analysis
install.packages("devtools")
library(devtools)
Version of this package made for R < 4.0 is no longer supported.
Please update to R version 4.1.2 (2021-11-01) -- "Bird Hippie"
install_github("cran/ProNet")
install_github("richrr/TransNetDemo")
Feb 14 2022: If the above does not work, please try the following:
- download https://github.com/richrr/TransNetDemo/archive/refs/heads/master.zip
- unzip
- Delete the line with ProNet (if it exists) and save the file “DESCRIPTION”
devtools::install("~/Desktop/TransNetDemo-master/")
- download https://github.com/cran/ProNet/archive/refs/heads/master.zip
- unzip
devtools::install("~/Desktop/ProNet-master/")
library(TransNetDemo) library(ProNet)
July 1 2021: Since ProNet is no longer available on CRAN, please follow the below steps to install TransNetDemo:
- Download zipped code folder from https://github.com/richrr/TransNetDemo and unzip, place in the user’s local home folder
- Point to the file “DESCRIPTION” and Ctrl + ”open with” a text editor
- Delete the line with ProNet and save the file “DESCRIPTION”
- In R 4.0, install TransNetDemo with devtools:
devtools::install("/path to TransNetDemo-master/")
You can comment the line "Identify_subnetworks(outNetwork)" and use Cytoscape plugin to identify them using MCODE or InfoMap.
Comment:
- Remotes: AckerDWM/gg3D
- This line in DESCRIPTION tells R that gg3D is on github in AckerDWM/gg3D
- This tells you how to include data in your package: https://r-pkgs.org/data.html