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Update main #37

Workflow file for this run

.github/workflows/python-app.yml at e1900df
# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: Python application
on:
pull_request:
branches: [ "main" ]
permissions:
contents: read
jobs:
build:
runs-on: self-hosted
steps:
- uses: actions/checkout@v3
- name: Install dependencies
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
python -m pip install --upgrade pip
pip install --upgrade -r requirements.txt
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: module tests
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
which python
python -m pytest module_tests/*
- name: Get data
run: |
cp -r /well/woolrich/users/yaq921/MEG-transfer-decoding/data data
- name: args_lda_pca_fe_multiclass
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_pca_fe_multiclass.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_pca_fe_multiclass.py
- name: args_lda_pca_sw_multiclass
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_pca_sw_multiclass.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_pca_sw_multiclass.py
- name: args_cichy92_lda_pca_fe_multiclass
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_cichy92_lda_pca_fe_multiclass.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_cichy92_lda_pca_fe_multiclass.py
- name: args_nn
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_nn.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_nn.py
- name: args_lda_nn_chn_multiclass
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_chn_multiclass.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_chn_multiclass.py
- name: args_lda_nn_fe_multiclass
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_fe_multiclass.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_fe_multiclass.py
- name: args_lda_nn_sw_multiclass
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_sw_multiclass.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_sw_multiclass.py
- name: args_lda_nn_fe_multiclass2pairwise
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_fe_multiclass2pairwise.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_fe_multiclass2pairwise.py
- name: args_lda_nn_fe_multiclass_spatialPFI
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_fe_multiclass_spatialPFI.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_fe_multiclass_spatialPFI.py
- name: args_lda_nn_fe_multiclass_spatiotemporal
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_fe_multiclass_spatiotemporal.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_fe_multiclass_spatiotemporal.py
- name: args_lda_nn_fe_multiclass_spectralPFI
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_fe_multiclass_spectralPFI.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_fe_multiclass_spectralPFI.py
- name: args_lda_nn_fe_multiclass_temporalPFI
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_fe_multiclass_temporalPFI.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_fe_multiclass_temporalPFI.py
- name: args_lda_nn_fe_multiclass_temporospectralPFI
run: |
source ~/.condasetup
module load Anaconda3
conda activate job_run
cp examples/args_lda_nn_fe_multiclass_temporospectralPFI.py args.py
taskset --cpu-list 12-23 python launch.py
python tests/test_lda_nn_fe_multiclass_temporospectralPFI.py