docs updated with added logo, favicon, install and server pages; colo…

…r scheme adjusted to match logo; adjustments made for #6

README.rst

@@ -2,23 +2,9 @@
 Sequence Independent Molecular Replacement Based on Available Database
 **********************************************************************
 
-Installation
-++++++++++++
-
-.. code:: bash
-   
-   git clone https://github.com/rigdenlab/SIMBAD.git
-   cd SIMBAD
-   ccp4-python setup.py build --script-python-path ccp4-python install --install-scripts $CCP4/bin --install-lib $CCP4/lib/py2/site-packages
-
-This will install SIMBAD into your CCP4 installation. On top of installing the source code, an executable script ``simbad`` should be automatically installed.
-
-SIMBAD uses a modified version of AMORE to perform rotation searches. This version of amore will be added to the CCP4
-distribution soon however in the meantime you will need to manually link this to your CCP4 installation:
-
-.. code:: bash
-
-   ln -s SIMBAD/static/amoreCCB2.exe $CCP4/bin/amoreCCB2.exe
+.. image:: https://readthedocs.org/projects/simbad/badge/?version=latest
+   :target: http://simbad.readthedocs.io/en/latest/?badge=latest
+   :alt: Documentation Status
 
 Documentation & Usage
 +++++++++++++++++++++
@@ -28,9 +14,12 @@ Contributing
 ++++++++++++
 There are two ways by which you can contribute to SIMBAD:
 
-1. Submit any suggestions to the `GitHub Issue Tracker <https://github.com/rigdenlab/simbad/issues>`_, or
+1. Submit any suggestions to the `GitHub Issue Tracker`_, or
 2. Fork this repository, commit your changes and submit a pull request.
 
+Found a Bug?
+++++++++++++
+Please use the `GitHub Issue Tracker`_.
 
 Contributors
 ++++++++++++
@@ -39,3 +28,6 @@ Contributors
 - Ronan Keegan
 - Felix Simkovic
 - Daniel Rigden
+
+
+.. _GitHub Issue Tracker: https://github.com/rigdenlab/simbad/issues

docs/_static/custom.css

@@ -92,26 +92,26 @@ overflow: visible !important;
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 -webkit-filter: none;
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-border: 1px solid #3a3c3d;
+border: 1px solid #674593;
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 .btn-primary {
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