Merge 8ba875d into 843a455

rigdenlab · Apr 6, 2018 · 7fda0ec · 7fda0ec
2 parents 843a455 + 8ba875d
commit 7fda0ec
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Showing 4 changed files with 5 additions and 2 deletions.
diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -19,6 +19,7 @@ Added
 - ``SequenceFile.filter_gapped`` to filter sequences with a certain threshold of gaps
 - ``SequenceFile.to_string`` and ``ContactMap.to_string`` methods
 - ``ContactMapMatrixFigure`` added to illustrate prediction signal of entire ``ContactMap``
+- Added support for ``nebcon`` contact prediction format
 Changed
 ~~~~~~~
 - Changed API interface for ``conkit.plot`` in accordance to necessary changes for above

diff --git a/conkit/io/_cache.py b/conkit/io/_cache.py
@@ -77,7 +77,7 @@ class _ParserCache(object):
         "a3m": ["a3m", "a3m-inserts"],
         "casp": ["casp", "casprr"],
         "pcons": ["flib", "pconsc", "pconsc2", "pconsc3"],
-        "psicov": ["psicov", "metapsicov"]
+        "psicov": ["psicov", "metapsicov", "nebcon"],
     }
 
     def __init__(self):

diff --git a/docs/examples/rst/script_plot_mat.rst b/docs/examples/rst/script_plot_mat.rst
@@ -1,7 +1,7 @@
 .. _script_plot_mat:
 
 Contact Map Matrix Plotting
---------------------
+---------------------------
 
 If you would like to plot a contact map using ConKit without the overhead of using Python, you can simply use the ``conkit-plot`` script.
 

diff --git a/docs/formats.rst b/docs/formats.rst
@@ -49,6 +49,8 @@ The following table contains the various different file formats currently implem
 +                    +------------------------+-----------------------------------------------------------+
 |                    | Ncont                  | ``ncont``:sup:`*`                                         |
 +                    +------------------------+-----------------------------------------------------------+
+|                    | NeBcon                 | ``nebcon``                                                |
++                    +------------------------+-----------------------------------------------------------+
 |                    | Pcons[C|C2|C3]         | ``pconsc``, ``pconsc2``, ``pconsc3``                      |
 +                    +------------------------+-----------------------------------------------------------+
 |                    | Protein DataBank (PDB) | ``pdb``:sup:`*`                                           |