default value changed in calculate_weights

rigdenlab · Jul 13, 2017 · b51b947 · b51b947
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diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -5,7 +5,7 @@ Changelog
 v0.8
 ----
 
-- Default value in ``calculate_meff()`` changed from 0.7 to 0.8 [more commonly used in literature]
+- Default value in ``calculate_meff()`` and ``calculate_weights()`` changed from 0.7 to 0.8 [more commonly used in literature]
 - Bug fix with PyPi installation where ``requirements.txt`` not found; fix includes removal of ``requirements.txt`` and addition of ``install_requires`` to ``setup.py`` instead. - Thanks to Miguel Correa for reporting this bug
 - Logging message coloring according to message level
 - ``filter()`` function added for redundancy/distant homolog removal from ``SequenceFile``

diff --git a/conkit/core/sequencefile.py b/conkit/core/sequencefile.py
@@ -244,7 +244,7 @@ def calculate_meff(self, identity=0.8):
         warnings.warn("This function will be deprecated in a future release!")
         return self.neff
 
-    def calculate_weights(self, identity=0.7):
+    def calculate_weights(self, identity=0.8):
         """Calculate the sequence weights
 
         This function calculates the sequence weights in the
@@ -259,7 +259,7 @@ def calculate_weights(self, identity=0.7):
         Parameters
         ----------
         identity : float, optional
-           The sequence identity to use for similarity decision [default: 0.7]
+           The sequence identity to use for similarity decision [default: 0.8]
 
         Returns
         -------