The Curator Service is the Reactome CRUD API to access curation-related data in Neo4J graph database. It is based on Spring MVC, based on REST and fully documented in Open API (previously Swagger).
git clone https://github.com/reactome/curator-service.git
cd curator-service
Maven Profile is a set of configuration values which can be used to set or override default values of Maven build. Using a build profile, you can customize build for different environments such as Production v/s Development environments.
Add the following code-snippet containing all the Reactome properties inside the tag <profiles>
into your ~/.m2/settings.xml
.
Please refer to Maven Profile Guideline if you don't have settings.xml
<profile>
<id>Reactome-Server</id>
<properties>
<mail.host>localhost</mail.host>
<mail.port>8181</mail.port>
<mail.username>username</mail.username>
<mail.password>password</mail.password>
<mail.enable.auth>true</mail.enable.auth>
<!-- Neo4J Configuration -->
<neo4j.host>localhost</neo4j.host>
<neo4j.port>7474</neo4j.port>
<neo4j.user>neo4j</neo4j.user>
<neo4j.password>password</neo4j.password>
<!-- Solr Configuration -->
<solr.host>http://localhost:8983/solr</solr.host>
<solr.core>reactome</solr.core>
<solr.user>admin</solr.user>
<solr.password>password</solr.password>
<!-- MySQL Configuration -->
<mysql.host>localhost</mysql.host>
<mysql.port>3306</mysql.port>
<mysql.reactome.database>reactome</mysql.reactome.database>
<mysql.report.database>report</mysql.report.database>
<mysql.user>curator</mysql.user>
<mysql.password>password</mysql.password>
<template.server>https://localhost/</template.server>
<!-- Log report -->
<cnf.mail.error.subject>Automated Error Report</cnf.mail.error.subject>
<cnf.mail.error.name>Error Report Agent</cnf.mail.error.name>
<cnf.mail.error.from>noreply@reactome.org</cnf.mail.error.from>
<cnf.mail.error.to>mail@domain.ac.uk</cnf.mail.error.to>
<!-- Report mail Configuration -->
<cnf.mail.report.hostname>reactome.org</cnf.mail.report.hostname>
<cnf.mail.report.from>noreply@reactome.org</cnf.mail.report.from>
<cnf.mail.report.to>mail@domain.ac.uk</cnf.mail.report.to>
<!-- Results not found internal Report -->
<report.user>reportadmin</report.user>
<report.password>password</report.password>
<!-- Logging -->
<logging.level>ERROR</logging.level>
<logging.dir>/var/log/tomcat7</logging.dir>
<!-- Analysis intermediate file -->
<analysis.structure.file>/usr/local/reactomes/Reactome/production/AnalysisService/input/analysis.bin</analysis.structure.file>
<analysis.result.root>/usr/local/reactomes/Reactome/production/AnalysisService/temp</analysis.result.root>
<!-- Common folders and file locations -->
<fireworks.json.folder>/usr/local/reactomes/Reactome/production/Website/static/download/current/fireworks</fireworks.json.folder>
<diagram.json.folder>/usr/local/reactomes/Reactome/production/Website/static/download/current/diagram</diagram.json.folder>
<diagram.exporter.temp.folder>/usr/local/reactomes/Reactome/production/ContentService/exporter/</diagram.exporter.temp.folder>
<tuples.uploaded.files.folder>/usr/local/reactomes/Reactome/production/ContentService/custom</tuples.uploaded.files.folder>
<!-- Needed for the Content-Service / Raster exporter -->
<ehld.folder>/usr/local/reactomes/Reactome/production/Website/static/download/current/ehld</ehld.folder>
<svg.summary.file>/usr/local/reactomes/Reactome/production/Website/static/download/current/ehld/svgsummary.txt</svg.summary.file>
<!-- Path to the experiments binary file -->
<experiments.data.file>/usr/local/reactomes/Reactome/production/AnalysisService/digester/experiments.bin</experiments.data.file>
</properties>
</profile>
mvn spring-boot:run -P Reactome-Server
Check if Tomcat has been initialised
[INFO] Using existing Tomcat server configuration at /Users/reactome/content-service/target/tomcat
INFO: Starting ProtocolHandler ["http-bio-8686"]
- 💻 Access your local installation