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Mixed-case primer input is not supported #4

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florianzwagemaker opened this issue Oct 15, 2021 · 1 comment · Fixed by #8
Closed

Mixed-case primer input is not supported #4

florianzwagemaker opened this issue Oct 15, 2021 · 1 comment · Fixed by #8
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@florianzwagemaker
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Currently AmpliGone is unable to process an input-primer fasta file with sequences both in lowercase as wel as uppercase. Currently only uppercase is supported as this is only supported by the ambiguity-mapping.

AmpliGone should be able to handle both uppercase as well as lowercase input primers.
@florianzwagemaker florianzwagemaker added the bug Something isn't working label Oct 15, 2021
@florianzwagemaker florianzwagemaker self-assigned this Oct 15, 2021
florianzwagemaker added a commit that referenced this issue Oct 19, 2021
@florianzwagemaker
fix: force all input primers to be uppercase #4
dc8dfe5 
additionally change email in setup.py
@florianzwagemaker florianzwagemaker linked a pull request Oct 25, 2021 that will close this issue
add github-actions rules + fix for primer case sensitivity #8
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Fixed in v0.2.1

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add github-actions rules + fix for primer case sensitivity RIVM-bioinformatics/AmpliGone
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