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@rki-mf1

RKI MF1 Bioinformatics

Bioinformatics code of MF1

Popular repositories

  1. clean clean Public

    A nextflow pipeline for decontamination of short reads, long reads and contigs

    Nextflow 23 2

  2. breakfast breakfast Public

    breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).

    Python 10 1

  3. covsonar covsonar Public

    A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.

    Python 6

  4. vocal vocal Public

    Vocal is a simple Variants Of Concern ALert system script. Doc https://rki-mf1.github.io/vocal-doc/

    Python 5 1

  5. 2023-SC2-Data-Science 2023-SC2-Data-Science Public

    Forked from rki-mf1/workshop-nanopore-bioinformatics

    Material for the SARS-CoV-2 data science course at FU Berlin.

    Shell 4

  6. FluPipe FluPipe Public

    Influenza genome reconstruction

    Python 3

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