-
Notifications
You must be signed in to change notification settings - Fork 41
/
NAMESPACE
66 lines (65 loc) · 1.69 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
# Generated by roxygen2: do not edit by hand
export(gdcBarPlot)
export(gdcCEAnalysis)
export(gdcClinicalDownload)
export(gdcClinicalMerge)
export(gdcCorPlot)
export(gdcDEAnalysis)
export(gdcDEReport)
export(gdcEnrichAnalysis)
export(gdcEnrichPlot)
export(gdcExportNetwork)
export(gdcFilterDuplicate)
export(gdcFilterSampleType)
export(gdcHeatmap)
export(gdcKMPlot)
export(gdcMatchSamples)
export(gdcParseMetadata)
export(gdcRNADownload)
export(gdcRNAMerge)
export(gdcSurvivalAnalysis)
export(gdcVolcanoPlot)
export(gdcVoomNormalization)
export(shinyCorPlot)
export(shinyKMPlot)
export(shinyPathview)
import(edgeR)
import(ggplot2)
import(org.Hs.eg.db)
import(shiny)
importFrom(BiocParallel,MulticoreParam)
importFrom(BiocParallel,register)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(DOSE,enrichDO)
importFrom(DT,datatable)
importFrom(GenomicDataCommons,gdcdata)
importFrom(XML,getNodeSet)
importFrom(XML,xmlApply)
importFrom(XML,xmlName)
importFrom(XML,xmlParse)
importFrom(XML,xmlValue)
importFrom(biomaRt,getBM)
importFrom(biomaRt,useMart)
importFrom(clusterProfiler,enrichGO)
importFrom(clusterProfiler,enrichKEGG)
importFrom(clusterProfiler,gofilter)
importFrom(clusterProfiler,simplify)
importFrom(gplots,bluered)
importFrom(gplots,colorpanel)
importFrom(gplots,heatmap.2)
importFrom(jsonlite,toJSON)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(pathview,pathview)
importFrom(rjson,fromJSON)
importFrom(survival,Surv)
importFrom(survival,coxph)
importFrom(survival,survdiff)
importFrom(survival,survfit)
importFrom(survminer,ggsurvplot)