Merge pull request #33 from robertzk/remove_mb_dependency

Remove mungebits dependency
robertzk · Apr 2, 2016 · ca9cdfa · ca9cdfa
2 parents 98c5893 + ff56937
commit ca9cdfa
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Showing 33 changed files with 91 additions and 32 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: syberiaStages
 Type: Package
 Title: Syberia Stages
-Version: 0.2.3
+Version: 0.2.3.9000
 Description: Syberia provides an opinionated unified framework for
     fast iteration on classifier development and deployment. It is
     founded on convention over configuration and aims to solve the
@@ -19,9 +19,9 @@ Imports:
     memoise,
     stagerunner,
     syberiaStructure,
-    statsUtils,
-    mungebits
+    statsUtils
 Suggests:
+    mungebits,
     testthatsomemore
 License: MIT
 LazyData: true

diff --git a/NAMESPACE b/NAMESPACE
@@ -1,4 +1,4 @@
-# Generated by roxygen2 (4.0.2.9000): do not edit by hand
+# Generated by roxygen2 (4.1.1): do not edit by hand
 
 export(data_stage)
 export(evaluation_stage)
@@ -9,7 +9,6 @@ export(import_stage)
 export(model_stage)
 import(devtools)
 import(memoise)
-import(mungebits)
 import(stagerunner)
 import(statsUtils)
 import(syberiaStructure)
diff --git a/R/syberiaStages-package.r b/R/syberiaStages-package.r
@@ -8,5 +8,5 @@
 #'
 #' @name syberiaStages
 #' @docType package
-#' @import devtools memoise stagerunner syberiaStructure statsUtils mungebits
+#' @import devtools memoise stagerunner syberiaStructure statsUtils
 NULL
diff --git a/man/build_export_stagerunner.Rd b/man/build_export_stagerunner.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/export_stage.r
 \name{build_export_stagerunner}
 \alias{build_export_stagerunner}

diff --git a/man/build_import_stagerunner.Rd b/man/build_import_stagerunner.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/import_stage.r
 \name{build_import_stagerunner}
 \alias{build_import_stagerunner}

diff --git a/man/common_file_formatter.Rd b/man/common_file_formatter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{common_file_formatter}
 \alias{common_file_formatter}

diff --git a/man/common_s3_formatter.Rd b/man/common_s3_formatter.Rd
@@ -0,0 +1,15 @@
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/adapter.r
+\name{common_s3_formatter}
+\alias{common_s3_formatter}
+\title{Common s3 formatter.}
+\usage{
+common_s3_formatter(opts)
+}
+\value{
+options.
+}
+\description{
+Format s3 options.
+}
+
diff --git a/man/common_s3_reader.Rd b/man/common_s3_reader.Rd
@@ -0,0 +1,12 @@
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/adapter.r
+\name{common_s3_reader}
+\alias{common_s3_reader}
+\title{Common s3 reader.}
+\usage{
+common_s3_reader(opts)
+}
+\description{
+Call s3 reader with arguments.
+}
+
diff --git a/man/common_s3mpi_package_loader.Rd b/man/common_s3mpi_package_loader.Rd
@@ -0,0 +1,16 @@
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/adapter.r
+\name{common_s3mpi_package_loader}
+\alias{common_s3mpi_package_loader}
+\title{Check if s3mpi package is installed and loaded.}
+\usage{
+common_s3mpi_package_loader()
+}
+\value{
+\code{TRUE} or \code{FALSE} indicating if loading and
+ attaching is successful.
+}
+\description{
+Stopped if s3mpi package is not installed.
+}
+
diff --git a/man/confusion_matrix.Rd b/man/confusion_matrix.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/evaluation_stage.r
 \name{confusion_matrix}
 \alias{confusion_matrix}

diff --git a/man/construct_R_adapter.Rd b/man/construct_R_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{construct_R_adapter}
 \alias{construct_R_adapter}

diff --git a/man/construct_file_adapter.Rd b/man/construct_file_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{construct_file_adapter}
 \alias{construct_file_adapter}

diff --git a/man/construct_s3_adapter.Rd b/man/construct_s3_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{construct_s3_adapter}
 \alias{construct_s3_adapter}

diff --git a/man/construct_s3data_adapter.Rd b/man/construct_s3data_adapter.Rd
@@ -0,0 +1,17 @@
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/adapter.r
+\name{construct_s3data_adapter}
+\alias{construct_s3data_adapter}
+\title{Construct an Amazon Web Services S3 data adapter.}
+\usage{
+construct_s3data_adapter()
+}
+\value{
+an \code{adapter} object which reads and writes data to Amazon's S3.
+}
+\description{
+This requires that the user has set up the s3mpi package to
+work correctly (for example, the s3mpi.path option should be set).
+(Note that this adapter is not related to R's S3 classes).
+}
+
diff --git a/man/data_stage.Rd b/man/data_stage.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/data_stage.r
 \name{data_stage}
 \alias{data_stage}

diff --git a/man/default_adapter.Rd b/man/default_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{default_adapter}
 \alias{default_adapter}

diff --git a/man/evaluation_stage.Rd b/man/evaluation_stage.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/evaluation_stage.r
 \name{evaluation_stage}
 \alias{evaluation_stage}

diff --git a/man/evaluation_stage_auc.Rd b/man/evaluation_stage_auc.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/evaluation_stage.r
 \name{evaluation_stage_auc}
 \alias{evaluation_stage_auc}

diff --git a/man/evaluation_stage_confusion_matrix.Rd b/man/evaluation_stage_confusion_matrix.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/evaluation_stage.r
 \name{evaluation_stage_confusion_matrix}
 \alias{evaluation_stage_confusion_matrix}

diff --git a/man/evaluation_stage_generate_options.Rd b/man/evaluation_stage_generate_options.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/evaluation_stage.r
 \name{evaluation_stage_generate_options}
 \alias{evaluation_stage_generate_options}

diff --git a/man/evaluation_stage_validation_plot.Rd b/man/evaluation_stage_validation_plot.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/evaluation_stage.r
 \name{evaluation_stage_validation_plot}
 \alias{evaluation_stage_validation_plot}

diff --git a/man/export_stage.Rd b/man/export_stage.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/export_stage.r
 \name{export_stage}
 \alias{export_stage}

diff --git a/man/fetch_adapter.Rd b/man/fetch_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{fetch_adapter}
 \alias{fetch_adapter}

diff --git a/man/fetch_custom_adapter.Rd b/man/fetch_custom_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{fetch_custom_adapter}
 \alias{fetch_custom_adapter}

diff --git a/man/fetch_model_container.Rd b/man/fetch_model_container.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/model_stage.r
 \name{fetch_model_container}
 \alias{fetch_model_container}

diff --git a/man/fetch_syberia_adapter.Rd b/man/fetch_syberia_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{fetch_syberia_adapter}
 \alias{fetch_syberia_adapter}

diff --git a/man/import_stage.Rd b/man/import_stage.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/import_stage.r
 \name{import_stage}
 \alias{import_stage}

diff --git a/man/list_merge.Rd b/man/list_merge.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/utils.r
 \name{list_merge}
 \alias{list_merge}

diff --git a/man/model_stage.Rd b/man/model_stage.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/model_stage.r
 \name{model_stage}
 \alias{model_stage}

diff --git a/man/parse_custom_adapter.Rd b/man/parse_custom_adapter.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/adapter.r
 \name{parse_custom_adapter}
 \alias{parse_custom_adapter}

diff --git a/man/parse_custom_classifier.Rd b/man/parse_custom_classifier.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/model_stage.r
 \name{parse_custom_classifier}
 \alias{parse_custom_classifier}

diff --git a/man/parse_custom_functions.Rd b/man/parse_custom_functions.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/utils.r
 \name{parse_custom_functions}
 \alias{parse_custom_functions}

diff --git a/man/syberiaStages.Rd b/man/syberiaStages.Rd
@@ -1,4 +1,4 @@
-% Generated by roxygen2 (4.0.2.9000): do not edit by hand
+% Generated by roxygen2 (4.1.1): do not edit by hand
 % Please edit documentation in R/syberiaStages-package.r
 \docType{package}
 \name{syberiaStages}