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DOC: Change concise example to be run_fissa
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scottclowe committed Jun 16, 2021
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7 changes: 3 additions & 4 deletions README.rst
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Expand Up @@ -56,11 +56,10 @@ A concise example of how to use FISSA is as follows.
import fissa
experiment = fissa.Experiment('path/to/tiffs', 'path/to/rois.zip', 'experiment_name')
experiment.separate()
result = fissa.run_fissa('path/to/tiffs', 'path/to/rois.zip')
# The separated time series data is now available as experiment.result
experiment.result[roi_index, tiff_index][0, :]
# The decontaminated time series is now available as
# result[roi_index, tiff_index][0, :]
We also have several example notebooks for a basic workflow and more complicated
workflows where FISSA needs to interact with the outputs of other two-photon
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