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rohitfarmer/README.md

Hi there 👋

I am an experienced computational biologist with eight years of post-PhD experience specializing in high-dimensional statistical and machine learning analysis, software and methods development, molecular modeling, molecular dynamics simulation, and bioinformatics. Proficient in several programming languages, software tools, data science packages, website development, and high-performance computing.

My most recent research revolved around statistical and machine learning-based analysis of flow and mass cytometry and SomaScan data in the human immunology domain.

I have a long-standing passion for photography that spans from macro to portraits to the landscape. I read often, and sometimes I write. I recently got my Ham radio liscence with the call sign KC3SNU. You can find more about me on my website https://rohitfarmer.com. Follow me on Mastodon.

Pinned

  1. ColabHDStIM ColabHDStIM Public

    Google Colab interface to HDStIM (High Dimensional Stimulation Immune Mapping)

    Jupyter Notebook

  2. dataalltheway dataalltheway Public

    Data All The Way

    HTML

  3. singularity-defs singularity-defs Public

    Definition (recipe) files for singularity containers.

    Singularity 1

  4. cytof-workflow-v4 cytof-workflow-v4 Public

    CyTOF Workflow Version 4

    R

  5. Nvim-R Demo Nvim-R Demo
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    # How to use Neovim or VIM Editor as an IDE for R
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    Note: This tutorial is written for Linux based systems.
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    ## Requirements
    
              
    
              
    
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          Instructions to build a singularity ...
Instructions to build a singularity container with popular data science and chemistry packages, including Tensorflow.       
    

          
    
              
    
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    # Building a Singularity Container for Machine Learning, Data Science, & Chemistry
    
              
    
              
    
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    ## Learning Objectives
    
              
    
              
    
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    1. Build a Linux based Singularity container. 
    
              
    
              
    
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       * First build a writable sandbox with essential elements.
    
              
    
          
    
    
    
  
    

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