Simple package to read and write fasta and fastq inputs.
Usage:
const { fasta, fastq } = require('bioinformatics-parser')
const exampleFasta =
`>strain_1
NNNACGTACGCTAGCTACGTA
CAGCTAGCTAGCTACATNNNN
>strain_2
NNNACGTACGCTAGCTACGTA
CAGCTAGCTAGCTACATNNNN`
const { ok, error, result } = fasta.parse(exampleFasta)
console.log(result)
// => [
// { description: 'strain_1',
// data: 'NNNACGTACGCTAGCTACGTACAGCTAGCTAGCTACATNNNN' },
// { ... },
// ]
const stringifiedFasta = fasta.stringify(result)
// `exampleFasta` might be different from `stringifiedFasta` because
// the line break length might be different, but the description and
// data stay the same
// NOTE: fastq only implements fastq.parse but not fastq.stringify,
// if you need it open an issue.