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Actually this behaviour is documented here. One should use the option "noclear" . May be the painting option should be made more visible at the top of the THStack class. Just do:
The above code draws correct h1 and h2 distributions, but the fill attribute 0 is not fully reflected in the canvas.
Please also see this thread in the ROOT forum.
https://root-forum.cern.ch/t/fill-attribute-is-not-fully-reflected-in-thstack/42987
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