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i have installed the package with if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")
BiocManager::install("biomaRt")
and then tried is.genome.available(db = "refseq", organism = "Homo sapiens")
as in the example but R 4.4.1 could not find such function
the same: getGenome( db = "refseq",
organism = "Homo sapiens",
path = file.path("_ncbi_downloads","genomes") )
Error in getGenome(db = "refseq", organism = "Homo sapiens", path = file.path("_ncbi_downloads", : can not find function "getGenome"
The text was updated successfully, but these errors were encountered:
Hi,
The name of this package is biomartr and not BiocManager::install("biomaRt").
biomartr
So installation should be done with:
# install developer version BiocManager::install("ropensci/biomartr")
I hope this helps!
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i have installed the package with
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biomaRt")
and then tried
is.genome.available(db = "refseq", organism = "Homo sapiens")
as in the example
but R 4.4.1 could not find such function
the same:
getGenome( db = "refseq",
Error in getGenome(db = "refseq", organism = "Homo sapiens", path = file.path("_ncbi_downloads", :
can not find function "getGenome"
The text was updated successfully, but these errors were encountered: