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Hi Scott,
Trying and failing to download the entire Insect dataset with bold_seqspec. The InsectNames vector was scrubbed from their website directly, but this was my first hack at trying to figure out a programmatic way to pull the Insect Order names directly from the BOLD website. Folks that know what they are doing could probably do this better!
With that vector of InsectNames, I then run the bold_seqspec call:
Insects_list <- lapply(insectNames, bold_seqspec)
But unfortunately, it generates this error:
Error in paste0(rawToChar(out$content, multiple = TRUE), collapse = "") :
result would exceed 2^31-1 bytes
In addition: Warning message:
In scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
EOF within quoted string
Next idea up for me is to break up that list into smaller bits, probably one for Lepidopterans, one for Coleopterans, and one for the rest. Thanks for any insights you might offer!
The text was updated successfully, but these errors were encountered:
Hi Scott,
Trying and failing to download the entire Insect dataset with
bold_seqspec
. TheInsectNames
vector was scrubbed from their website directly, but this was my first hack at trying to figure out a programmatic way to pull the Insect Order names directly from the BOLD website. Folks that know what they are doing could probably do this better!With that vector of InsectNames, I then run the
bold_seqspec
call:But unfortunately, it generates this error:
Next idea up for me is to break up that list into smaller bits, probably one for Lepidopterans, one for Coleopterans, and one for the rest. Thanks for any insights you might offer!
The text was updated successfully, but these errors were encountered: