dbparser 2.0.3

Enhancements

• Updated unit tests with latest DrugBank DB info v 5.1.12

Bugs Fixes

• Fixed "Drug Targets has two drugbank_id columns" bug (#163)

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dbparser 2.0.2

Enhancements

• Replaced "-" with "_" in tibbles column names (#111)
• Renamed "primary_key" to "drugbank_id" in parsed drugs "general_information" tibble (#111)
• Replaced "parent_key" keywords in different tibbles column names with original parent name (#111)
• Updated Vignette to use interactive canvasXpress package plots

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dbparser 2.0.1

Breaking changes

• Deprecated saving parsed data into given database (#140)
• Deprecated saving parsed data into a csv file (#140)
• Deprecated old structure public methods (#141)
• Updated minimum R required version to 3.5 (#143)

New features

• Introduced new methods for paring DrugBank DB and returning dvobject (#141)

Major Updates

• Updated unit tests to work with new data structure (#141)

Minor Fixes

• Removed RMariaDB dependency (#129)

Bugs Fixes

• Fixed output references (#147)
• Updated parseDrugBanKparameters default values (#146)
• Fixed package documentation references (#144)
• Fixed CRAN error on some of linux info (#145)

dbparser v1.2.0

• UI Changes

  • Introduce progress bar in parser functions

• New Parsers

  • Collective Parsers
    • drugs, cett and References Parsers
  • Elements Parsers
    • attachments parsers for drugs and CETT
    • drug_pharmacology parser
  • Rename drugs_books parser to drugs_textbooks
  • Rename drug_all parser to run_all_parsers
  • Rename drug parser to drug_general_information

• Documentation Update:

  • Add returned parsed data structure
  • Explain the returned data functionality as a whole and for each elements
  • Point out to related/similar parsers

• Package design

  • For those who thinking to contribute in dbparser, now parsers are implemented as R6 classes.

• Minor Fixes

  • Update database saver functions to accommodate new DrugBank data size.

dbparser v1.1.2

Major Changes

• Enhance many memory and performance issues for many parsers.
• Change the drug classification representations to extract more useful
  information.

Minor Changes

• Change some drug tibbles features names

DEFUNCT

• Size columns in drugs main table is no longer exist, will do full
  statistical analysis later using dvminer package.

dbparser v1.1.1

dbparser 1.1.1

• Fix column size issue while importing into SQL Server (#91)
• Fix dbparser and upcoming CRAN release of dplyr issues (#92)
• Fix CRAN Notes (#93)
• Fix package documentation and site references

dbparser 1.0.4

Fix save drugs dataframes as csv several issues
Update sql database dataframes saver functions
Update sql database saver functions documentations.
Support MariaDB and introduce related functionalities.

v1.0.2

dbparser 1.0.2

• Fix zip file location issue
• Replace Secondary and third keys columns from drug framework with other_keys column that contains any other -
• keys that might exist in addition to the primary key
• Add average-mass, monoisotopic-mass and calculated-properties parsers.
• Support saving parsed drugs related parsed database as csv

v1.0.1

dbparser 1.0.1

• Fix CRAN Note
• Improve documentation
• Refactor unused functions
• Remove Count features from drug data set
• Fix serveral typoes in documentation and code
• Fix consistency issue of CLASS of Data Frames Returned by dbparser
• Check if drugbank database exist before parsing
• Add support for international_brands and salts elements
• Properly rename some features to have clear names
• Reduce datasets size by getting unique rows only
• Support reading zip file containing DrugBank xml database

v1.0.0

First release of dbparser package that submitted to CRAN
https://cran.r-project.org/web/packages/dbparser/index.html